View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_39 (Length: 454)

Name: NF1172_low_39
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_39
NF1172_low_39
[»] chr4 (2 HSPs)
chr4 (37-454)||(43953277-43953692)
chr4 (1-37)||(43953198-43953234)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 37 - 454
Target Start/End: Original strand, 43953277 - 43953692
Alignment:
Q  37 gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacattcatggttactcttgcacatgttgaaaccttgattaagttaagcatt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  43953277 gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacactcatggttactcatgcacatgttgaaaccttgattaagttaagcatt 43953376  T
Q  137 ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43953377 ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt 43953476  T
Q  237 tcgtatgagtatcataaatcagaggagaggctagctagtgtaataattcattcaaaaatat--tgagttaacatgaattgatcactaataaaatcatcat 334  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  43953477 tcgtatgagtatcataaatcagaggagaggctagctagtg---taattcattcaaaaatattgtgagttaacatgaattgatcactaataaaatcatcat 43953573  T
Q  335 ccctgagaagaagnnnnnnnncttaataaaatcatcatataaggtattttctaaagtttaacagaaaaacagattaaatacaaaagcatttttcaatggt 434  Q
    |||||||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43953574 ccctgagaagaagaaaaaaaac-taataaaatcatcatataaggtattttctaaagtttaacagaaaaacagattaaatacaaaagcatttttcaatggt 43953672  T
Q  435 gctgaaatgccttatctcga 454  Q
    ||||||||||||||||||||    
T  43953673 gctgaaatgccttatctcga 43953692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43953198 - 43953234
Alignment:
Q  1 cattgatgttgcatcccatggcatagaaataaattag 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  43953198 cattgatgttgcatcccatggcatagaaataaattag 43953234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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