View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_4 (Length: 757)

Name: NF1172_low_4
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_4
NF1172_low_4
[»] chr7 (9 HSPs)
chr7 (197-738)||(38912282-38912836)
chr7 (87-235)||(38912841-38912999)
chr7 (139-196)||(29654329-29654386)
chr7 (139-192)||(38663700-38663753)
chr7 (197-235)||(38911785-38911823)
chr7 (140-192)||(34963364-34963416)
chr7 (143-187)||(40037792-40037836)
chr7 (90-192)||(18662308-18662407)
chr7 (139-192)||(16831304-16831357)
[»] chr8 (3 HSPs)
chr8 (7-89)||(5897076-5897158)
chr8 (144-182)||(44814128-44814166)
chr8 (151-192)||(34496878-34496919)
[»] chr5 (3 HSPs)
chr5 (91-191)||(15965804-15965914)
chr5 (145-192)||(1355435-1355482)
chr5 (139-176)||(1352405-1352442)
[»] chr4 (4 HSPs)
chr4 (91-188)||(41899084-41899191)
chr4 (139-192)||(6167874-6167927)
chr4 (91-188)||(5168526-5168633)
chr4 (139-192)||(48051737-48051790)
[»] chr1 (6 HSPs)
chr1 (95-188)||(8472346-8472446)
chr1 (91-192)||(25129842-25129953)
chr1 (138-191)||(46369635-46369688)
chr1 (87-132)||(15646924-15646970)
chr1 (142-195)||(2748624-2748677)
chr1 (139-176)||(32161583-32161620)
[»] chr3 (5 HSPs)
chr3 (142-191)||(52685087-52685136)
chr3 (139-191)||(4204041-4204093)
chr3 (91-132)||(1402049-1402091)
chr3 (133-176)||(25985428-25985471)
chr3 (139-188)||(45153570-45153619)
[»] chr2 (6 HSPs)
chr2 (139-192)||(13799783-13799836)
chr2 (142-188)||(41252745-41252791)
chr2 (89-189)||(32838629-32838739)
chr2 (151-192)||(38042431-38042472)
chr2 (91-132)||(33847497-33847539)
chr2 (133-170)||(38721631-38721668)
[»] chr6 (3 HSPs)
chr6 (144-176)||(29129316-29129348)
chr6 (139-176)||(18742223-18742260)
chr6 (139-192)||(30456788-30456841)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 197 - 738
Target Start/End: Complemental strand, 38912836 - 38912282
Alignment:
Q  197 ataaattattactgaaagaaaaaacgtttaaagcataacttgaatttaaatgtatacatttgacataaggattaatacgagtaatgttcagtgacatttg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38912836 ataaattattactgaaagaaaaaacgtttaaagcataacttgaatttaaatgtatacatttgacataaggattaatacgagtaatgttcagtgacatttg 38912737  T
Q  297 ataaattttcataaactatttgagaactttacaagtgcacgaacgaatttgatcgtttaannnnnnnngtt------------ggtaagaccgggtctaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||            |||||||||||||||||    
T  38912736 ataaattttcataaactatttgagaactttacaagtgcacgaacgaatttgattgtttaattttttttgtttttctttttgttggtaagaccgggtctaa 38912637  T
Q  385 aaggcgtcaaagaatgaagcttgtcctatatatacctgtattgattaagtcggtaacccttatttctatgactatattatattcttcttttagatgaaca 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38912636 aaggcgtcaaagaatgaagcttgtcctatatatacctgtattgattaagtcggtaacccttatttctatgactatattatattcttcttttagatgaaca 38912537  T
Q  485 agtagattttgcttttgcctgaacattaacgaatagaggaatgcacgaattagagaca-nnnnnnnagcagtaataattggaacaatagttacaagacaa 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||    
T  38912536 agtagattttgcttttgcctgaacattaacgaatagaggaatgcacgaattagagacattttttttagcagtaataattggtacaatagttacaagacaa 38912437  T
Q  584 gtcaaagatatagtcgtatcaacgtagacttcaggcatccaatgttgaataaaccttcactcatccattgtatattattttctggagtatgaactcaatc 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38912436 gtcaaagatatagtcgtatcaacgtagacttcaggcatccaatgttgaataaaccttcactcatccattgtatattattttctggagtatgaactcaatc 38912337  T
Q  684 ttcattcccaatttatgtccttgtcaatgaaatattttctgtgcctaccaagtat 738  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  38912336 ttcattcccaatttatgtccttgtcaatgaaatattttatgtgcctagcaagtat 38912282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 38912999 - 38912841
Alignment:
Q  87 agattaaagaagaaatgttgtcttggaa-tggtgcattcaatgcatt--------aaaat-caactttttctatttaaaatttatcaattatttctattt 176  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||    
T  38912999 agattaaagaataaatgttgtcttggaaatggtgcattcaatgcattgaaactttaaaatacaactttttctatttaaaatttatcaattatttctattt 38912900  T
Q  177 gtgtattcttaacaagacccataaattattactgaaagaaaaaacgtttaaagcataac 235  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38912899 gtgtatttttaacaagacccataaattattactgaaagaaaaaacgtttaaagcataac 38912841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 29654386 - 29654329
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaagaccc 196  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||    
T  29654386 aactttttctatttaaaattcatctattatttttatttgtgtattcttaacaataccc 29654329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 38663700 - 38663753
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  38663700 aactttttatatttaaaatttatcaattatttctatttttgtatccttaacaag 38663753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 38911785 - 38911823
Alignment:
Q  197 ataaattattactgaaagaaaaaacgtttaaagcataac 235  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  38911785 ataaattattactcaaagaaaaaacgtttaaagcataac 38911823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 34963416 - 34963364
Alignment:
Q  140 actttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||||| ||||||||||||||||||||  |||| ||||| |||||||||    
T  34963416 actttttctacttaaaatttatcaattattttcatttttgtatccttaacaag 34963364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 40037792 - 40037836
Alignment:
Q  143 ttttctatttaaaatttatcaattatttctatttgtgtattctta 187  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||    
T  40037792 ttttctatttaaaatttatcaattatttttatttttttattctta 40037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 18662407 - 18662308
Alignment:
Q  90 ttaaagaagaaatgttgtcttggaa-tggtgcattcaatgcattaaaatcaactttttctatttaaaatttatcaattatttctatttgtgtattcttaa 188  Q
    |||||||| |||| |||||||| || || ||||||||||| ||| |||    ||||||||| ||||||||||||||| ||||  |||| ||||| |||||    
T  18662407 ttaaagaataaattttgtcttgaaaatgatgcattcaatgtattgaaa----ctttttctacttaaaatttatcaatgattttcatttttgtatccttaa 18662312  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 16831304 - 16831357
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||| ||||| |||||||||||||||||  |||| ||||| |||||||||    
T  16831304 aactttttttatttgaaatttatcaattattttcatttttgtatccttaacaag 16831357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 5897076 - 5897158
Alignment:
Q  7 gtaagtacaattgtttgtgtattnnnnnnnncttatatttgagagggagcataatgaattgatagactcacacttgaaggaga 89  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5897076 gtaagtacaattgtttgtgtattcaaaaaagcttatatttgagagggagcataatgaattgatagactcacacttgaaggaga 5897158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 44814128 - 44814166
Alignment:
Q  144 tttctatttaaaatttatcaattatttctatttgtgtat 182  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  44814128 tttctacttaaaatttatcaattatttctatttttgtat 44814166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 34496919 - 34496878
Alignment:
Q  151 ttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||||| |||||||||| |||| |||||||||||||||    
T  34496919 ttaaaatttaccaattatttccatttttgtattcttaacaag 34496878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 15965804 - 15965914
Alignment:
Q  91 taaagaagaaatgttgtcttggaa-tggtgcattcaatgcattaaaatc---------aactttttctatttaaaatttatcaattatttctatttgtgt 180  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||          ||||||||||| |||||||| |||||||||||||||||||||    
T  15965804 taaagaagaaatgttgtcttagaaatggtgcattcaatgcatttaaattttaaaatgtaactttttctacttaaaattcatcaattatttctatttgtgt 15965903  T
Q  181 attcttaacaa 191  Q
    |||||||||||    
T  15965904 attcttaacaa 15965914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 1355435 - 1355482
Alignment:
Q  145 ttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  1355435 ttctatttaaaatttatcaattatttttatttttgtatccttaacaag 1355482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 1352405 - 1352442
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctattt 176  Q
    |||||||| || ||||||||||||||||||||||||||    
T  1352405 aactttttttacttaaaatttatcaattatttctattt 1352442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 41899084 - 41899191
Alignment:
Q  91 taaagaagaaatgttgtcttggaa-tggtgcattcaatgcatt--------aaaatc-aactttttctatttaaaatttatcaattatttctatttgtgt 180  Q
    |||||||||||| ||||||||||| ||||||||||||||||||        |||||  ||||||||||| |||||||| |||||||||||||||| ||||    
T  41899084 taaagaagaaatattgtcttggaaatggtgcattcaatgcattgaaactttaaaatgtaactttttctacttaaaattcatcaattatttctattcgtgt 41899183  T
Q  181 attcttaa 188  Q
    ||||||||    
T  41899184 attcttaa 41899191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 6167874 - 6167927
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||| || |||||||| ||||||||||| |||||||||||||||||||||    
T  6167874 aactttttttacttaaaattcatcaattatttttatttgtgtattcttaacaag 6167927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 5168526 - 5168633
Alignment:
Q  91 taaagaagaaatgttgtcttggaa-tggtgcattcaatgcattaaaatc---------aactttttctatttaaaatttatcaattatttctatttgtgt 180  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| ||||          || |||||||| |||||||| ||||||||||||||||| |||    
T  5168526 taaagaagaaatgttatcttggaaatggtgcattcaatgtattgaaattttaaaatataattttttctacttaaaattcatcaattatttctatttatgt 5168625  T
Q  181 attcttaa 188  Q
    ||||||||    
T  5168626 attcttaa 5168633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 48051737 - 48051790
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||||||  ||||||||||||||||||||||||| || || |||||||||    
T  48051737 aactttttctacataaaatttatcaattatttctatttttgaatccttaacaag 48051790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 8472446 - 8472346
Alignment:
Q  95 gaagaaatgttgtcttggaa-tggtgcattcaatgcattaaaatc------aactttttctatttaaaatttatcaattatttctatttgtgtattctta 187  Q
    |||||||||||||||||||| |||||||||||| ||||| |||        ||||||||||| |||||||||||||||||||||||||||| |||| |||    
T  8472446 gaagaaatgttgtcttggaaatggtgcattcaaagcattgaaactttatgtaactttttctacttaaaatttatcaattatttctatttgtatattttta 8472347  T
Q  188 a 188  Q
    |    
T  8472346 a 8472346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 25129953 - 25129842
Alignment:
Q  91 taaagaagaaatgttgtcttggaa-tggtgcattcaatgcatt--------aaaatc-aactttttctatttaaaatttatcaattatttctatttgtgt 180  Q
    ||||||||||||||| |||||||| ||||||||||||||||||        |||||  ||||||||||| |||||||| ||||||||||||||||| | |    
T  25129953 taaagaagaaatgttatcttggaaatggtgcattcaatgcattgaaactttaaaatgtaactttttctacttaaaattcatcaattatttctatttatat 25129854  T
Q  181 attcttaacaag 192  Q
    ||| ||||||||    
T  25129853 atttttaacaag 25129842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 46369635 - 46369688
Alignment:
Q  138 caactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaa 191  Q
    ||||||||| ||| ||||||||||||||||||||||||| || || ||||||||    
T  46369635 caactttttttatataaaatttatcaattatttctatttttgaatccttaacaa 46369688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 15646924 - 15646970
Alignment:
Q  87 agattaaagaagaaatgttgtcttgg-aatggtgcattcaatgcatt 132  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  15646924 agattaaagaagaaattttgtcttggaaatggtgcattgaatgcatt 15646970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 2748624 - 2748677
Alignment:
Q  142 tttttctatttaaaatttatcaattatttctatttgtgtattcttaacaagacc 195  Q
    ||||| || |||||||||||||||||||||||||| |||||  ||| |||||||    
T  2748624 tttttttacttaaaatttatcaattatttctatttttgtatcattagcaagacc 2748677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 32161583 - 32161620
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctattt 176  Q
    |||||||||||  |||||||||||||||||||||||||    
T  32161583 aactttttctacataaaatttatcaattatttctattt 32161620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 52685136 - 52685087
Alignment:
Q  142 tttttctatttaaaatttatcaattatttctatttgtgtattcttaacaa 191  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  52685136 tttttctatttaaaatttagcaattatttctatttttgtatccttaacaa 52685087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 4204093 - 4204041
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaa 191  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  4204093 aactttttttatttaaaatttatcaattatttttatttttgtatacttaacaa 4204041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 1402091 - 1402049
Alignment:
Q  91 taaagaagaaatgttgtcttgg-aatggtgcattcaatgcatt 132  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  1402091 taaagaagaaatgttgtcttggaaatggtgcattcaatgcatt 1402049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 25985428 - 25985471
Alignment:
Q  133 aaaatcaactttttctatttaaaatttatcaattatttctattt 176  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||    
T  25985428 aaaaacaactttttctatataaaagttatcaattatttctattt 25985471  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 45153570 - 45153619
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaa 188  Q
    ||||||||||| ||||||||||||||||||||| | || ||||| |||||    
T  45153570 aactttttctacttaaaatttatcaattatttccacttttgtatccttaa 45153619  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 13799836 - 13799783
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| |||||||||    
T  13799836 aactttttctatttaaaatttactaattatttctatttttgtatccttaacaag 13799783  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 41252791 - 41252745
Alignment:
Q  142 tttttctatttaaaatttatcaattatttctatttgtgtattcttaa 188  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  41252791 tttttctacttaaaattcatcaattatttgtatttgtgtattcttaa 41252745  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 32838739 - 32838629
Alignment:
Q  89 attaaagaagaaatgttgtcttggaa-tggtgcattcaatgcatt--------aaaatc-aactttttctatttaaaatttatcaattatttctatttgt 178  Q
    |||||||||||||| ||||||||||| || |||||||||||||||        |||||  ||| ||||||||||||||||||||||||||||  |||| |    
T  32838739 attaaagaagaaattttgtcttggaaatgatgcattcaatgcattgaaactttaaaatgtaacattttctatttaaaatttatcaattattttcattttt 32838640  T
Q  179 gtattcttaac 189  Q
    |||| ||||||    
T  32838639 gtatccttaac 32838629  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 38042472 - 38042431
Alignment:
Q  151 ttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  38042472 ttaaaatttatcaattatttctatttatgtatccttaacaag 38042431  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 33847497 - 33847539
Alignment:
Q  91 taaagaagaaatgttgtcttgg-aatggtgcattcaatgcatt 132  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  33847497 taaagaagaaatgttgtcttggaaatgatgcattcaatgcatt 33847539  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 38721668 - 38721631
Alignment:
Q  133 aaaatcaactttttctatttaaaatttatcaattattt 170  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  38721668 aaaattaactttttttatttaaaatttatcaattattt 38721631  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 29129348 - 29129316
Alignment:
Q  144 tttctatttaaaatttatcaattatttctattt 176  Q
    |||||||||||||||||||||||||||||||||    
T  29129348 tttctatttaaaatttatcaattatttctattt 29129316  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 18742223 - 18742260
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctattt 176  Q
    |||||||||||  |||||||||||||||||||||||||    
T  18742223 aactttttctacgtaaaatttatcaattatttctattt 18742260  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 30456841 - 30456788
Alignment:
Q  139 aactttttctatttaaaatttatcaattatttctatttgtgtattcttaacaag 192  Q
    |||||||| || | ||||||||||||||||||| |||| ||||| |||||||||    
T  30456841 aactttttatactaaaaatttatcaattatttccatttttgtatccttaacaag 30456788  T

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