View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_41 (Length: 445)
Name: NF1172_low_41
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 47 - 433
Target Start/End: Original strand, 4858124 - 4858506
Alignment:
| Q |
47 |
aatgttttgggcacgaatcctcggtttaagccagtaactccatcctgtgccacaatatctgcatcaaccaaaaaatttatatggtatttacacaagaaca |
146 |
Q |
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| T |
4858124 |
aatgttttgggcacgaatcctcggtttaagccagttactccatcctgtgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaagaaca |
4858223 |
T |
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| Q |
147 |
ctgaagcaaataaacttcaactattccccagtgtgtgcacgcacgcagtttttgcagaaataagggaattaattattcttatacatttgttactaattca |
246 |
Q |
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| T |
4858224 |
ctgaagcaaataaacttcaactattccccagtgtgtgcac----gcagtttttgcagaaataagggaattaattattcttatacatttgttactaattca |
4858319 |
T |
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| Q |
247 |
aattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcgatctataaggatt |
346 |
Q |
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| T |
4858320 |
aattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcgatctataaggatt |
4858419 |
T |
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| Q |
347 |
acccttcaattgcatctctctttgaacgatctgtccagaggatagcatgcaagtgtggcagggatgtttcagttctcttttgatatt |
433 |
Q |
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| T |
4858420 |
acccttcaattgcatctctctttgaacgatctgtccagaggatagcatgcaagtgtggcagggatgtttcagttctcttttgatatt |
4858506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 5176378 - 5176253
Alignment:
| Q |
47 |
aatgttttgggcacgaatcctcggtttaagccagtaactccatcctgtgccacaatatctgcatcaaccaaaaaatttatatggtatttacacaagaaca |
146 |
Q |
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| T |
5176378 |
aatgttttgggcatgaatcctcggtttaagccaatagctccatcttgtgccacaatacttgcatcaaccaaaaacttaacatggtattcacacaagaaca |
5176279 |
T |
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| Q |
147 |
ctgaagcaaataaacttcaactattc |
172 |
Q |
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| T |
5176278 |
ctgaagcatataaacttaaactattc |
5176253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 391
Target Start/End: Original strand, 4838342 - 4838497
Alignment:
| Q |
234 |
tgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcg |
333 |
Q |
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| T |
4838342 |
tgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgtgaaa--tgatgaagctaaaaataaaagccgagca |
4838439 |
T |
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| Q |
334 |
atctataaggattacccttcaattgcatctctctttgaacgatctgtccagaggatag |
391 |
Q |
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| T |
4838440 |
atctataaggtgtgcccttcgattgcatctctcttcgaacgatctgtccagaggatag |
4838497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 5176199 - 5176125
Alignment:
| Q |
191 |
gcagtttttgcagaaataagggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgt |
265 |
Q |
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| T |
5176199 |
gcagtttttgcacaaataagggtattaattaatcttatacatttgttaataattcaaataattcgactataatgt |
5176125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 4839910 - 4839952
Alignment:
| Q |
387 |
gatagcatgcaagtgtggcagggatgtttcagttctcttttga |
429 |
Q |
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| T |
4839910 |
gatagcatgcaagtgtagcagggatgtttcagttctcttttga |
4839952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 5133319 - 5133385
Alignment:
| Q |
53 |
ttgggcacgaatcctcggtttaagccagtaactccatcctgtgccacaatatctgcatcaaccaaaa |
119 |
Q |
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| T |
5133319 |
ttgggcacaaatcctcggtacaagccaataactccatcttgtgccacaataccttcatcaatcaaaa |
5133385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 5133641 - 5133708
Alignment:
| Q |
337 |
tataaggattacccttcaattgcatctctctttgaacgatctgtccagaggatagcatgcaagtgtggca |
406 |
Q |
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| T |
5133641 |
tataaggtgtaccattcaattgcatctgtcttcgaac--tgtgtccagaggatagcatgtaagtgtggca |
5133708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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