View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_42 (Length: 444)

Name: NF1172_low_42
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_42
NF1172_low_42
[»] chr3 (21 HSPs)
chr3 (287-434)||(1553396-1553541)
chr3 (1-86)||(1553739-1553824)
chr3 (160-220)||(1553605-1553665)
chr3 (1-86)||(30226685-30226770)
chr3 (2-86)||(3983898-3983982)
chr3 (6-86)||(29715881-29715961)
chr3 (287-354)||(30226967-30227034)
chr3 (1-86)||(15769143-15769228)
chr3 (1-86)||(53165308-53165393)
chr3 (5-67)||(21382149-21382211)
chr3 (1-86)||(7754304-7754389)
chr3 (287-354)||(13803403-13803470)
chr3 (290-354)||(21381881-21381946)
chr3 (5-72)||(5271707-5271774)
chr3 (287-354)||(38519367-38519434)
chr3 (1-63)||(47118197-47118259)
chr3 (5-84)||(3116621-3116700)
chr3 (292-353)||(50367919-50367980)
chr3 (22-86)||(25322230-25322294)
chr3 (287-352)||(5271804-5271869)
chr3 (287-320)||(7754589-7754622)
[»] chr4 (26 HSPs)
chr4 (2-86)||(22492904-22492988)
chr4 (1-86)||(4400701-4400786)
chr4 (1-86)||(5409461-5409546)
chr4 (1-86)||(27982127-27982212)
chr4 (1-86)||(49069437-49069522)
chr4 (1-86)||(21637900-21637985)
chr4 (1-82)||(24016610-24016690)
chr4 (1-86)||(44121712-44121798)
chr4 (287-354)||(21059348-21059415)
chr4 (40-86)||(11891926-11891972)
chr4 (297-354)||(7429630-7429687)
chr4 (287-353)||(44121446-44121514)
chr4 (17-68)||(3691286-3691337)
chr4 (287-383)||(27982411-27982509)
chr4 (40-86)||(11892672-11892718)
chr4 (287-354)||(11892917-11892984)
chr4 (287-353)||(48006270-48006337)
chr4 (292-350)||(11892176-11892234)
chr4 (287-352)||(21638184-21638249)
chr4 (1-86)||(24635575-24635660)
chr4 (293-354)||(25699919-25699980)
chr4 (287-348)||(49069589-49069650)
chr4 (288-348)||(5409779-5409839)
chr4 (289-348)||(24016289-24016348)
chr4 (303-352)||(22492664-22492713)
chr4 (287-351)||(4400983-4401047)
[»] chr1 (14 HSPs)
chr1 (1-86)||(8829487-8829572)
chr1 (1-84)||(2222780-2222863)
chr1 (1-86)||(9092292-9092377)
chr1 (287-348)||(5369201-5369262)
chr1 (1-70)||(40776228-40776296)
chr1 (1-86)||(4812196-4812280)
chr1 (287-348)||(4812480-4812541)
chr1 (292-348)||(40776497-40776553)
chr1 (287-352)||(12159151-12159216)
chr1 (22-86)||(32797510-32797574)
chr1 (289-348)||(2604425-2604484)
chr1 (2-73)||(2604650-2604721)
chr1 (1-83)||(5368923-5369007)
chr1 (287-319)||(2222547-2222579)
[»] chr8 (20 HSPs)
chr8 (1-86)||(30804550-30804635)
chr8 (1-83)||(17702730-17702812)
chr8 (1-86)||(12358112-12358197)
chr8 (1-86)||(12359240-12359325)
chr8 (1-86)||(34139868-34139953)
chr8 (1-84)||(23265865-23265948)
chr8 (289-352)||(9480353-9480416)
chr8 (287-354)||(12358391-12358458)
chr8 (287-354)||(23268132-23268199)
chr8 (289-354)||(10730825-10730890)
chr8 (287-354)||(30804284-30804351)
chr8 (287-352)||(10349741-10349807)
chr8 (287-354)||(12359519-12359586)
chr8 (47-86)||(25094506-25094545)
chr8 (291-353)||(17702878-17702940)
chr8 (40-86)||(26513973-26514019)
chr8 (287-354)||(26514218-26514287)
chr8 (288-346)||(34140156-34140214)
chr8 (289-352)||(13415594-13415658)
chr8 (287-319)||(45358449-45358481)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-82)||(180931-181012)
[»] chr7 (20 HSPs)
chr7 (1-86)||(7416844-7416929)
chr7 (1-86)||(23311952-23312037)
chr7 (1-86)||(3393219-3393305)
chr7 (2-84)||(18113744-18113826)
chr7 (1-84)||(1362813-1362896)
chr7 (287-354)||(30404590-30404656)
chr7 (1-61)||(49014905-49014965)
chr7 (287-354)||(29188883-29188950)
chr7 (289-344)||(2907632-2907687)
chr7 (287-354)||(18113449-18113516)
chr7 (290-348)||(31191697-31191756)
chr7 (39-86)||(36891996-36892043)
chr7 (33-86)||(30404330-30404383)
chr7 (289-345)||(11728122-11728178)
chr7 (286-318)||(38287521-38287553)
chr7 (287-354)||(1362544-1362613)
chr7 (292-354)||(27687566-27687628)
chr7 (287-320)||(12101890-12101923)
chr7 (289-353)||(27772437-27772499)
chr7 (40-84)||(31451200-31451244)
[»] chr2 (14 HSPs)
chr2 (1-86)||(13289699-13289784)
chr2 (1-86)||(15880668-15880753)
chr2 (5-86)||(25933793-25933874)
chr2 (1-86)||(43214799-43214885)
chr2 (288-354)||(37354532-37354598)
chr2 (1-86)||(33737753-33737838)
chr2 (1-86)||(37134096-37134181)
chr2 (287-358)||(45157110-45157182)
chr2 (287-357)||(27924305-27924376)
chr2 (290-354)||(33737478-33737542)
chr2 (34-86)||(37354793-37354845)
chr2 (40-83)||(33741836-33741879)
chr2 (287-354)||(43215082-43215151)
chr2 (32-86)||(45157369-45157422)
[»] chr5 (19 HSPs)
chr5 (7-86)||(12190619-12190698)
chr5 (1-86)||(41472419-41472504)
chr5 (295-359)||(28810819-28810884)
chr5 (31-86)||(21317404-21317459)
chr5 (1-86)||(31036802-31036886)
chr5 (287-352)||(42455110-42455175)
chr5 (287-352)||(12190897-12190962)
chr5 (1-83)||(35618304-35618382)
chr5 (36-83)||(17916641-17916688)
chr5 (290-352)||(19101761-19101823)
chr5 (32-86)||(19102014-19102068)
chr5 (289-354)||(21317681-21317747)
chr5 (5-52)||(19321611-19321658)
chr5 (289-348)||(31036527-31036586)
chr5 (36-86)||(10154300-10154349)
chr5 (289-319)||(19321913-19321943)
chr5 (26-84)||(27085693-27085751)
chr5 (289-318)||(10154550-10154579)
chr5 (22-86)||(39796679-39796743)
[»] scaffold0240 (2 HSPs)
scaffold0240 (1-86)||(10833-10918)
scaffold0240 (293-354)||(11104-11165)
[»] scaffold0067 (1 HSPs)
scaffold0067 (287-353)||(4767-4833)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-73)||(36573-36645)
[»] scaffold0886 (1 HSPs)
scaffold0886 (1-73)||(2887-2959)
[»] chr6 (1 HSPs)
chr6 (46-84)||(2423031-2423069)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 287 - 434
Target Start/End: Complemental strand, 1553541 - 1553396
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttccg-tatccaatgtatggtgccgtatcgtatccg 385  Q
    ||||||||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||    ||  |||||||||||||    
T  1553541 tgtagtttaaatttatttttttattaaagtattatgaccgtatcgtatcttaaattttaaaattttccggtatccaatgc---gtatcgtatcgtatccg 1553445  T
Q  386 ttaggcttcatagatcagctcctatcgttgcacatcacacctagtatta 434  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1553444 ttaggcttcatagatcagctcctatcgttgcacatcacacttagtatta 1553396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1553824 - 1553739
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  1553824 aattgactaagtaatggtgttctctttttagaatatatcatatatgtaattgactagttgtcactttctttattatcattattact 1553739  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 1553665 - 1553605
Alignment:
Q  160 aattgtcgtgtaaagacaattttattgtaccttgccgttgttctatgtctgtttggtttag 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1553665 aattgtcgtgtaaagacaattttattgtaccttgtcgttgttctatgtctgtttggtttag 1553605  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30226685 - 30226770
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  30226685 aattgactaagtaatgatgctttctatttagaatatatcatatatgtaattgactaattgtcgttttctttattatcaatattact 30226770  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 3983898 - 3983982
Alignment:
Q  2 attgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||| || |||||||||||| |||||||||| ||| ||||||||    
T  3983898 attgactaagtaatgatgttttctatttaggatatatcatatatgcaagtgactaattgtcgctttctttattatctatattact 3983982  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 29715881 - 29715961
Alignment:
Q  6 actaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||| |||||    
T  29715881 actaagtaataatgttctcttttttggatatatcatatatgtaattgactaattgtcacttttattattatcaatgttact 29715961  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 30226967 - 30227034
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| ||||||||  || |||||||||||||||||||||||||||||    
T  30226967 tgtagtttaaatttaattttttattgaagtatcccaaccgtatcgtatcttaaattttaaaattttcc 30227034  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15769143 - 15769228
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||| ||| |||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| | || |||||||||    
T  15769143 aattgactaagtgatgatgttttctatttaggatatatgatatatgtaattgactaattgtcgctttctttcttattaatattact 15769228  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53165393 - 53165308
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| | | |||| |||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||    
T  53165393 aattgactaagtaatgatgttttttatttatgatatatcatatatgtaattgattaattgacactttatttattatcaatattact 53165308  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 21382211 - 21382149
Alignment:
Q  5 gactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcacttt 67  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  21382211 gactaagtaatagtgttctctttatgggatatatcatatatgtaatcgactaattgtcacttt 21382149  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7754304 - 7754389
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||| ||||||||  |||| | | |||| |||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  7754304 aattgattaagtaataatgttttttatttatgatatatcatatatgtaattgactaattgtcgttttctttattatcaatattact 7754389  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 13803470 - 13803403
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||| |||| |||||| |||||||||    
T  13803470 tgtagtttaaatttaattttatattaaagtatcctggccgtatcgtttcttgaattttgaaattttcc 13803403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 21381946 - 21381881
Alignment:
Q  290 agtttaaatttaattttttatt-aaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||||||||||||||||||||| |||||||||||  |||||||| |||| ||||||||||||||||    
T  21381946 agtttaaatttaattttttatttaaagtatcctggttgtatcgtctcttgaattttaaaattttcc 21381881  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 5271707 - 5271774
Alignment:
Q  5 gactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttcttta 72  Q
    |||||||||||| |||| ||| | || ||||||||||||||||||||| ||||||||| |||||||||    
T  5271707 gactaagtaatgatgttttctgtgtaagatatatcatatatgtaattggctaattgtcgctttcttta 5271774  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 38519434 - 38519367
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||| ||||||||||||||||||||||||||||  ||  |||||||||||| ||||||| ||||||||    
T  38519434 tgtactttaaatttaattttttattaaagtatctcgaacgtatcgtatcttgaattttataattttcc 38519367  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47118197 - 47118259
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtca 63  Q
    |||||| ||||||||| |||||||||||| | |||||||||||| |||||||| |||||||||    
T  47118197 aattgattaagtaatgatgttctcttttttgaatatatcatatacgtaattgattaattgtca 47118259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 3116621 - 3116700
Alignment:
Q  5 gactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||| |||| ||||||| ||| |  ||||||||||||||||| | ||||||||||||||||| | || ||||||||||    
T  3116621 gactaaataatagtgttctatttatgtgatatatcatatatgtattcgactaattgtcactttcatcattatcaatatta 3116700  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 50367980 - 50367919
Alignment:
Q  292 tttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||||| |||||||||||||||||| |  ||   ||||||||||||||||||||||||||    
T  50367980 tttaaattgaattttttattaaagtattccaaccaaatcgtatcttaaattttaaaattttc 50367919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 25322294 - 25322230
Alignment:
Q  22 ctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| |||||||| |||||||||||||||||||  ||||| |||| ||  |||||||||||    
T  25322294 ctctttttgggatatattatatatgtaattgactaatcatcactctcttaatcgtcaatattact 25322230  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 5271804 - 5271869
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||| |||||| |||| |||||||    | ||||||||||||||| |||||||||||    
T  5271804 tgtagtttaaattcaattttctattgaagtatcacagccgtatcgtatcttaaaatttaaaatttt 5271869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 7754589 - 7754622
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcc 320  Q
    ||||||||||||||||||||||||| ||||||||    
T  7754589 tgtagtttaaatttaattttttattgaagtatcc 7754622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 22492988 - 22492904
Alignment:
Q  2 attgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22492988 attgactaagtaatgatgttctctttttgggatatatcatatatgtaattgactaattgtcactttctttattatcaatattact 22492904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4400701 - 4400786
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  4400701 aattgactaagtaatgatgctttctatttaggatatatcatatatgtaattgactaattgtcactttatttattatcaatattact 4400786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5409461 - 5409546
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  5409461 aattgactaagtaatgatgttttctattaaggatatatcatatatgtaattgactaattgtcgctttctttattagcaatattact 5409546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27982127 - 27982212
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  27982127 aattgactaagtaatgatgttttctatttatgatatatcatatatgtaattgactaattatcgctttctttattatcaatattact 27982212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49069437 - 49069522
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  49069437 aattaactaagtaatgatgttttctatttaggatatatcatatatgtaattgactaattgtggctttctttattatcaatattact 49069522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21637900 - 21637985
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||   ||||||||| ||||||||||||    
T  21637900 aattgactaagtaatgatgttttctatttaggatatatcatgtatgtaattgactaattgttgttttctttattatcaatattact 21637985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24016690 - 24016610
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatat 82  Q
    |||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  24016690 aattgaataagtaataatgttctctttttaggatatatcatata-gtaattgactaattgtcactttctatattatcaatat 24016610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44121798 - 44121712
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaa-ttgtcactttctttatgatcaatattact 86  Q
    ||||||||| |||||| |||| ||| |||| ||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  44121798 aattgactaggtaatgatgttttctatttaagatatattatatatgtaattgactaatttgtcgctttctttattatcaatattact 44121712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 21059348 - 21059415
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| ||||||||   | |||| ||||||||||||||||||||||||    
T  21059348 tgtagtttaaatttaattttttattgaagtatcccagccgtattgtatcttaaattttaaaattttcc 21059415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 11891926 - 11891972
Alignment:
Q  40 atatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  11891926 atatatgtaattgactaattgtcactttctttattatcaatattact 11891972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 7429630 - 7429687
Alignment:
Q  297 atttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  7429630 atttaattttttattaaagtatcccagctgcatcgtatcttaaattttaaaattttcc 7429687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 44121514 - 44121446
Alignment:
Q  287 tgtagtttaaatttaatttttt--attaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||| |||||||||||||||  ||| ||||||||  |||||||||||||||||||||||||||||||    
T  44121514 tgtagtctaaatttaattttttttattgaagtatccaaactgtatcgtatcttaaattttaaaattttc 44121446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 3691337 - 3691286
Alignment:
Q  17 gtgttctctttttaggatatatcatatatgtaattgactaattgtcactttc 68  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  3691337 gtgttttctttttggaatatatcatatatgtaattgactaattgtcactttc 3691286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 383
Target Start/End: Original strand, 27982411 - 27982509
Alignment:
Q  287 tgtagtttaaatttaattttttatta-aagtatcctgactgtatcgtatcttaaattttaaaa-ttttccgtatccaatgtat-ggtgccgtatcgtatc 383  Q
    |||||||||||||||||||||| ||  ||||||||  ||||||||||||||| |||||||||| |||||||||| || ||||| |||| |||||||||||    
T  27982411 tgtagtttaaatttaattttttttttgaagtatcccaactgtatcgtatcttgaattttaaaatttttccgtat-cactgtatcggtgtcgtatcgtatc 27982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 11892672 - 11892718
Alignment:
Q  40 atatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  11892672 atatatgtaattgactaattgtcactttccttattatcaatattact 11892718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 11892917 - 11892984
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||| |||||||||||||||||||| ||||||||   | ||||||||| || ||||||||||||||||    
T  11892917 tgtaatttaaatttaattttttattgaagtatcccagccgtatcgtatattgaattttaaaattttcc 11892984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 48006270 - 48006337
Alignment:
Q  287 tgtagtttaaatttaatttttt-attaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||||||||||||||||||| ||| |||||||||  | ||||||||| || |||||||||||||||    
T  48006270 tgtagtttaaatttaatttttttattgaagtatcctagccgtatcgtatattgaattttaaaattttc 48006337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 11892176 - 11892234
Alignment:
Q  292 tttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatt 350  Q
    |||||||||||||||||||| ||||||||   | |||||||||||| ||||||||||||    
T  11892176 tttaaatttaattttttattgaagtatcccagccgtatcgtatcttgaattttaaaatt 11892234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 21638184 - 21638249
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatc-ctgactgtatcgtatcttaaattttaaaatttt 352  Q
    |||||||||||||||| |||||||| ||||||| | |||| ||||||||||| ||||||||||||||    
T  21638184 tgtagtttaaatttaaatttttattgaagtatctcagact-tatcgtatcttgaattttaaaatttt 21638249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24635660 - 24635575
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaa-ttgtcactttctttatgatcaatattact 86  Q
    ||||||| ||||||||| ||||| ||| | ||||  ||||||||||||||||| ||| ||||||||||| |||| ||||||||||||    
T  24635660 aattgacaaagtaatggagttct-tttctgggattaatcatatatgtaattgaataaattgtcactttcgttataatcaatattact 24635575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 25699919 - 25699980
Alignment:
Q  293 ttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||| ||||||||| ||||||||   | |||||||||||| ||||||||||||||||    
T  25699919 ttaaatttatttttttattgaagtatcccagccgtatcgtatcttgaattttaaaattttcc 25699980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 49069589 - 49069650
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||||||||||||||||||| |||||||    | |||||||||||| ||||||||||    
T  49069589 tgtagtttaaatttaattttttattgaagtatctcagccgtatcgtatcttgaattttaaaa 49069650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 5409779 - 5409839
Alignment:
Q  288 gtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    |||||||||||||||||||||||| |||||| |  |  |||| ||||||||||||||||||    
T  5409779 gtagtttaaatttaattttttattgaagtattccaatcgtattgtatcttaaattttaaaa 5409839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 24016348 - 24016289
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||||||| ||||||||||||||| ||||  ||||| ||||||| |||| |||||    
T  24016348 tagtttaaatttatttttttattaaagtaccctggttgtattgtatcttgaattgtaaaa 24016289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 22492713 - 22492664
Alignment:
Q  303 ttttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||||||   ||| ||| |||||||||||||||||||||||    
T  22492713 ttttttattaaagtatatcgaccgtaacgtatcttaaattttaaaatttt 22492664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 4400983 - 4401047
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattt 351  Q
    ||||||||||||||||||||||||  |||||||    | |||| |||||||||||||| ||||||    
T  4400983 tgtagtttaaatttaattttttatcgaagtatctcagccgtatggtatcttaaatttttaaattt 4401047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8829572 - 8829487
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  8829572 aattgactaagtaattgtgttctctatttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattact 8829487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2222863 - 2222780
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||||||||||||  |||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  2222863 aattgactaagtaattatgttttctatttaggatatatcatatatgtaattgattaattgtcgctttctttattatcaatatta 2222780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9092377 - 9092292
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||| |||||| |||| ||| ||||| ||||||||||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  9092377 aattgactaggtaatgatgttttctatttagaatatatcatatatgtaatttactaattgtcgatttctttattatcaatattact 9092292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 5369201 - 5369262
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||    
T  5369201 tgtagtttaaatttaattttttattaaagtatcttgaccgtattgtatcttgaattttaaaa 5369262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40776228 - 40776296
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctt 70  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| || |||||||    
T  40776228 aattgactaagtaatgatgt-ctctatttaggatatatcatatatgtaattgactaattttcgctttctt 40776296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4812196 - 4812280
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||  |||| ||  ||| |||||||||||| |||||||||| |||||||||| ||||||||||||    
T  4812196 aattgactaagtaatgatgttttcaatttatgag-tattatatatgtaattaactaattgtcgctttctttattatcaatattact 4812280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 4812480 - 4812541
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||| || ||||||||||    
T  4812480 tgtagtttaaatttaattttttattgaagtatcccatctgtatcgtattttgaattttaaaa 4812541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 40776497 - 40776553
Alignment:
Q  292 tttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    |||||||||||||||||||| ||||||||  || |||||||||||| ||||||||||    
T  40776497 tttaaatttaattttttattcaagtatcccaaccgtatcgtatcttgaattttaaaa 40776553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 12159151 - 12159216
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||||||| |||||||||||||||     ||||||||||||| || |||||||||||    
T  12159151 tgtagtttaaatttaatattttattaaagtatcacagttgtatcgtatcttgaaatttaaaatttt 12159216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 32797510 - 32797574
Alignment:
Q  22 ctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| |||||||| |||||||||||||||||||  ||||| |||| ||  |||||||||||    
T  32797510 ctctttttgggatatattatatatgtaattgactaatcatcactctcttaatcgtcaatattact 32797574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 2604484 - 2604425
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||| ||| ||||  | |||||||||  |||||||||||||||||||||||||||    
T  2604484 tagtttaaaattatttttcaaataaagtatctcgactgtatcgtatcttaaattttaaaa 2604425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2604721 - 2604650
Alignment:
Q  2 attgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttat 73  Q
    ||||||||||||| | | |||  ||||| | |||||||||||| |||||||||| |||||||| ||||||||    
T  2604721 attgactaagtaacgatattcatttttttgtatatatcatataagtaattgactgattgtcacattctttat 2604650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5368923 - 5369007
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatat--atcatatatgtaattgactaattgtcactttctttatgatcaatatt 83  Q
    ||||||||| ||||| ||||||| ||||| ||||||  |||||||| ||||||| |||| | | | ||||||||| |||||||||    
T  5368923 aattgactaggtaatagtgttctatttttgggatatatatcatatacgtaattgtctaactattattttctttattatcaatatt 5369007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 2222579 - 2222547
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatc 319  Q
    ||||||||||||||||||||||||| |||||||    
T  2222579 tgtagtttaaatttaattttttattgaagtatc 2222547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 30804635 - 30804550
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  30804635 aattgactaagtaacgatgtattctttttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattact 30804550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17702730 - 17702812
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatt 83  Q
    ||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17702730 aattgactaggtaatagtgttatcttttttggatatatcatatatgtaattgactaaatgtcattttctttattatcaatatt 17702812  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12358112 - 12358197
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| ||||| | |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  12358112 aattgacttagtaacgatgttttctatttagaatatatcatatatgtaattgactaattgtcgctttctttattatcaacattact 12358197  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12359240 - 12359325
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| ||||| | |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  12359240 aattgacttagtaacgatgttttctatttagaatatatcatatatgtaattgactaattgtcgctttctttattatcaacattact 12359325  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34139868 - 34139953
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||  ||||||||||| ||||||| |||||||||| |||||||||||| | ||||||||||| ||||| ||||||||||||    
T  34139868 aattgactcggtaatggtgttttctttttgggatatatcacatatgtaattgaatgattgtcactttatttattatcaatattact 34139953  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23265865 - 23265948
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||||||||||||  |||| ||| |||| ||||||||||||||||| ||||||||||||| ||||||||||  |||||||||    
T  23265865 aattgactaagtaataatgttttctatttatgatatatcatatatgtagttgactaattgtcgctttctttattgtcaatatta 23265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 9480416 - 9480353
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||||||||||||||||||||| ||   ||||||||| |||||||||||| ||||    
T  9480416 tagtttaaatttaattttttattaaagtatcatggtcgtatcgtattttaaattttaaattttt 9480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 12358391 - 12358458
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| |||||||    | |||||||||||| ||||||||||||||||    
T  12358391 tgtagtttaaatttaattttttattgaagtatctcagccgtatcgtatcttgaattttaaaattttcc 12358458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 23268132 - 23268199
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| ||||||||   | ||||| |||||| ||||||||||||||||    
T  23268132 tgtagtttaaatttaattttttattgaagtatcccagccgtatcatatcttgaattttaaaattttcc 23268199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 10730890 - 10730825
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||||||||||||||||| |||||||||||  |||| |||||| ||||| ||||||||| ||||||    
T  10730890 tagtttaaatttaattttatattaaagtattttgaccgtatcgcatcttgaattttaaatttttcc 10730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 30804351 - 30804284
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatc-ctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||||||||||| | | | |||||||||||| ||||||||| ||||||    
T  30804351 tgtagtttaaatttaattttttattaaagtatctcagtc-gtatcgtatcttgaattttaaagttttcc 30804284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 10349741 - 10349807
Alignment:
Q  287 tgtagtttaaatttaatttttt-attaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    |||||||||||||||||||||| ||| ||||||||   | |||||||||||| ||||||||||||||    
T  10349741 tgtagtttaaatttaatttttttattgaagtatcccagccgtatcgtatcttgaattttaaaatttt 10349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 12359519 - 12359586
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| |||||||    | |||| |||| || ||||||||||||||||    
T  12359519 tgtagtttaaatttaattttttattgaagtatctcagccgtattgtattttgaattttaaaattttcc 12359586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 25094545 - 25094506
Alignment:
Q  47 taattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  25094545 taattgactaattgtcactttctttgttatcaatattact 25094506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 17702878 - 17702940
Alignment:
Q  291 gtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||||||||||||| |||| || |||||   | |||||||||||| |||||||||||||||    
T  17702878 gtttaaatttaattttgtattcaattatcccttccgtatcgtatcttgaattttaaaattttc 17702940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 26513973 - 26514019
Alignment:
Q  40 atatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||| ||| |||||||| |||||||||| ||||||||||||    
T  26513973 atatatgtaagtgattaattgtcgctttctttattatcaatattact 26514019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 26514218 - 26514287
Alignment:
Q  287 tgtagtttaaatttaatttttt--attaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||  ||| ||||||||   | ||||| |||||| ||||||||||||||||    
T  26514218 tgtagtttaaatttaattttttttattgaagtatcccagccgtatcatatcttgaattttaaaattttcc 26514287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 34140156 - 34140214
Alignment:
Q  288 gtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaa 346  Q
    |||||||||||||| |||||||||||||||||   || ||||||||||||  |||||||    
T  34140156 gtagtttaaatttagttttttattaaagtatcacaaccgtatcgtatcttggattttaa 34140214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 13415594 - 13415658
Alignment:
Q  289 tagtttaaatttaatttttta-ttaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    |||||||||||||||||| || ||||| ||||| | | || ||||||||| ||||||||||||||    
T  13415594 tagtttaaatttaattttataattaaaatatcccggccgtttcgtatcttgaattttaaaatttt 13415658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 45358449 - 45358481
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatc 319  Q
    |||||||||||||| ||||||||||||||||||    
T  45358449 tgtagtttaaattttattttttattaaagtatc 45358481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 181012 - 180931
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatat 82  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  181012 aattgactaagtaatgatgatttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatat 180931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7416844 - 7416929
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  7416844 aattgactaagtaattatgttttctatttaggatatatcatatatgtaattgactaattgttgctttctttattatcaatattact 7416929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 23311952 - 23312037
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  23311952 aattgactaagtaatgatgttttctatttatgatatatcatatatgtagttgactaattgtcgctttctttattatcaatattact 23312037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 3393219 - 3393305
Alignment:
Q  1 aattgactaagtaatggtgttctctt-tttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||    
T  3393219 aattgactaagtaatgatgttcttttatttaggatatattatatatgtaattgactaattgtcgctttctttattatcaatcttact 3393305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 18113826 - 18113744
Alignment:
Q  2 attgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||    
T  18113826 attgactaagtaatgaggttttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattataaatatta 18113744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1362896 - 1362813
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| || |||||||||| || |||||||    
T  1362896 aattgactaagtaatgatgttttctatttaggatatatcacatatgtaattgactaattttcgctttctttattattaatatta 1362813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 30404590 - 30404656
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||    
T  30404590 tgtagtttaaatttaattttatattaaagtatcc-aaccgtatcgtatcttaaattttaaaattttcc 30404656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 49014965 - 49014905
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgt 61  Q
    |||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||    
T  49014965 aattgactaagtaatgatgttttatatttaggatatatcatatatgtaattgactaattgt 49014905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 29188950 - 29188883
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| |||||||   || ||||||||||||||||||| |||||||||    
T  29188950 tgtagtttaaatttaattttttattgaagtatctgaaccgtatcgtatcttaaatttttaaattttcc 29188883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 2907687 - 2907632
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaatttt 344  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||    
T  2907687 tagtttaaatttaattttatattaaagtatcctggccgtatcgtatcttgaatttt 2907632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 18113516 - 18113449
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||  |||||||   ||  ||||||||||||||||||||||||||||    
T  18113516 tgtagtttaaatttaattttttatcgaagtatctcaaccatatcgtatcttaaattttaaaattttcc 18113449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 31191697 - 31191756
Alignment:
Q  290 agtttaaatttaattttttattaaagtatcctgactgt-atcgtatcttaaattttaaaa 348  Q
    ||||||||||||||||||||||||||||||| | | || |||||||||||||||| ||||    
T  31191697 agtttaaatttaattttttattaaagtatcccggcggtaatcgtatcttaaatttaaaaa 31191756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 36891996 - 36892043
Alignment:
Q  39 catatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  36891996 catatatgtaattgactaattgacactttatttattatcaatattact 36892043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 30404330 - 30404383
Alignment:
Q  33 atatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||||| |||||||||||||||   ||||||||| ||||||||||||    
T  30404330 atatatcatatatataattgactaattgtttttttctttattatcaatattact 30404383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 11728122 - 11728178
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaatttta 345  Q
    ||||| |||||||||||||||||||||||| |||   |||||||||||| |||||||    
T  11728122 tagttaaaatttaattttttattaaagtattctggacgtatcgtatcttgaatttta 11728178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 38287553 - 38287521
Alignment:
Q  286 gtgtagtttaaatttaattttttattaaagtat 318  Q
    |||||||||||||||||||||||||||||||||    
T  38287553 gtgtagtttaaatttaattttttattaaagtat 38287521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 1362613 - 1362544
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtat--cctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||||| ||||||  ||   | |||| |||||||| |||||||||||||||    
T  1362613 tgtagtttaaatttaattttttattgaagtatatccaagccgtattgtatcttatattttaaaattttcc 1362544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 27687628 - 27687566
Alignment:
Q  292 tttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||| ||||||||||||||||   ||  ||||||||||| ||||||| ||||||||    
T  27687628 tttaaatttaagtttttattaaagtatctcaaccatatcgtatcttgaattttagaattttcc 27687566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 12101890 - 12101923
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcc 320  Q
    |||||||||||||||||||||||||||| |||||    
T  12101890 tgtagtttaaatttaattttttattaaactatcc 12101923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 27772499 - 27772437
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||||||||||| ||||||||||| |||||  ||  |||| ||||||||| ||||||||||||    
T  27772499 tagtttaaatttaaatttttattaaaatatcccaac--tatcctatcttaaagtttaaaattttc 27772437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 31451200 - 31451244
Alignment:
Q  40 atatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||    
T  31451200 atataagtaattgattaattgtcactttctttatcatcaaaatta 31451244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 13289699 - 13289784
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||| ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  13289699 aattgattaagtaatgatgttttctatttaggatatatcatatatgtaatttactaattgtcgctttctttattatcaatattact 13289784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15880668 - 15880753
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||    
T  15880668 aattgactaagtaatgatgttctctacttaggatatatcatatatgtaattgattagttgtcgctttctttattatcaatattact 15880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 25933793 - 25933874
Alignment:
Q  5 gactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  25933793 gactaagtaatgatgttttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattaacaatattact 25933874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43214799 - 43214885
Alignment:
Q  1 aattgactaa-gtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||| |||||| || | ||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  43214799 aattgactaaagtaatgatgatttctatttaggatatatcatatatgtaattgactaattgtcgctttctttattatcaatattact 43214885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 37354598 - 37354532
Alignment:
Q  288 gtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  37354598 gtagtttaactttaattttttattaaagtatcctgaccgtatcgtatcttgaattttaaagttttcc 37354532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 33737838 - 33737753
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||||  |||| ||| ||| ||||  |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33737838 aattgactaaccaatgatgtactcattttgagatatatcatatatgtaattgactaattgttactttctttatcatcaatattact 33737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37134181 - 37134096
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| |||| | ||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  37134181 aattgactaagtaatgatgttttctatttatgttatattatatatgtaattgactaattgtcgctttctttattatcaacattact 37134096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 45157182 - 45157110
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaatttt-aaaattttccgtat 358  Q
    |||||||||||||||||||| |||||||||||| | ||| ||||||||||| |||||| ||||||| ||||||    
T  45157182 tgtagtttaaatttaattttatattaaagtatcttaactatatcgtatcttgaattttgaaaatttcccgtat 45157110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 27924376 - 27924305
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaatttt-aaaattttccgta 357  Q
    |||||||||||||||||||||||||||| |||||   | |||||||||||| |||||| |||||||||||||    
T  27924376 tgtagtttaaatttaattttttattaaattatccccgccgtatcgtatcttgaattttgaaaattttccgta 27924305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 33737542 - 33737478
Alignment:
Q  290 agtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||| |||||||||||| ||   |||| ||||||| ||||||||||||||||    
T  33737542 agtttaaatttaattttatattaaagtatcttgggcgtatagtatcttgaattttaaaattttcc 33737478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 37354845 - 37354793
Alignment:
Q  34 tatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||| |||||| ||||||||||||||||||||||  ||||||| ||||    
T  37354845 tatatcatacatgtaactgactaattgtcactttctttaatatcaataatact 37354793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 33741879 - 33741836
Alignment:
Q  40 atatatgtaattgactaattgtcactttctttatgatcaatatt 83  Q
    |||||||||||||||||||||| ||||||||||| || ||||||    
T  33741879 atatatgtaattgactaattgttactttctttattatgaatatt 33741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 43215082 - 43215151
Alignment:
Q  287 tgtagtttaaatttaatttttt--attaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||||||||||||||||  ||| || ||| |  ||  ||||||||||||||||||||||||||||    
T  43215082 tgtagtttaaatttaattttttttattgaaatattccaaccatatcgtatcttaaattttaaaattttcc 43215151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 45157422 - 45157369
Alignment:
Q  32 gatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||    
T  45157422 gatatatcatatatataattaactaattgtcacttt-ttttttatcaatattact 45157369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 12190619 - 12190698
Alignment:
Q  7 ctaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  12190619 ctaagtaatgatgttttctatttagaatatatcatatatgtaattgactaattgtcgctttctttattatcaatattact 12190698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 41472504 - 41472419
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||    
T  41472504 aattgactaagtaatgatgctttctatttaggatatatcatatatgtaattgactaattgtcgctttatctattatcaatattact 41472419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 28810884 - 28810819
Alignment:
Q  295 aaatttaattttttattaaagtatcctgactgtatcgtatcttaaatttt-aaaattttccgtatc 359  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  28810884 aaatttaattttttattaaagtatctcgaccgtatcgtatcttaaattttgaaaattttccgtatc 28810819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 21317404 - 21317459
Alignment:
Q  31 ggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  21317404 ggatatataatatatgtaattgactaattgtcactttatttattatcaatattact 21317459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 31036886 - 31036802
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||  |||| |||| ||||||| ||||    
T  31036886 aattgaccaagta-tggtgttctctatttaggatatatcatatatgtaattgattcattgtcgttttcattattatcaatactact 31036802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 42455110 - 42455175
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    |||||||||||||||||||||||||||||||||    | | |||||||||||||||||||||||||    
T  42455110 tgtagtttaaatttaattttttattaaagtatctcagccgcatcgtatcttaaattttaaaatttt 42455175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 12190897 - 12190962
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||||||||||||||| |||||||    | |||||||||||| ||||||||||||||    
T  12190897 tgtagtttaaatttaattttttattgaagtatctcagccgtatcgtatcttgaattttaaaatttt 12190962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35618304 - 35618382
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatt 83  Q
    |||||| || ||||| ||||||||||||| ||||||||    ||||||||||||||| ||||| ||||||||| |||||||||    
T  35618304 aattgaataggtaatagtgttctctttttgggatatat----tatgtaattgactaactgtcattttctttattatcaatatt 35618382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 17916688 - 17916641
Alignment:
Q  36 tatcatatatgtaattgactaattgtcactttctttatgatcaatatt 83  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||    
T  17916688 tatcatatatgtaattgactaattgccgctttctttattatcaatatt 17916641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 19101823 - 19101761
Alignment:
Q  290 agtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaatttt 352  Q
    ||||||||||||||||| |||||| ||||||||   |||||||||||| |||||| |||||||    
T  19101823 agtttaaatttaattttatattaacgtatcctggtcgtatcgtatcttgaattttgaaatttt 19101761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 19102068 - 19102014
Alignment:
Q  32 gatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||| ||||||||||||||||| ||| ||||| || |||||||||    
T  19102068 gatatatcatatatataattgactaattgtcattttttttattattaatattact 19102014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 21317681 - 21317747
Alignment:
Q  289 tagtttaaatttaatttt-ttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    |||||||||||| ||||| ||||||||||||| ||  |||||  |||||||||||||||||||||||    
T  21317681 tagtttaaatttcatttttttattaaagtatcatggttgtattatatcttaaattttaaaattttcc 21317747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 19321611 - 19321658
Alignment:
Q  5 gactaagtaatggtgttctctttttaggatatatcatatatgtaattg 52  Q
    |||||||||||  ||||||||||||  |||||||||||||||||||||    
T  19321611 gactaagtaataatgttctctttttgagatatatcatatatgtaattg 19321658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 31036586 - 31036527
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaa 348  Q
    ||||||||||||||||||||||| |||||||   || | |||||||||||||||| ||||    
T  31036586 tagtttaaatttaattttttattcaagtatctcaaccggatcgtatcttaaatttaaaaa 31036527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 10154300 - 10154349
Alignment:
Q  36 tatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    ||||||||| ||| |||||||||| ||||||||||||| ||||||||||||    
T  10154300 tatcatata-gtacttgactaattatcactttctttatcatcaatattact 10154349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 19321913 - 19321943
Alignment:
Q  289 tagtttaaatttaattttttattaaagtatc 319  Q
    |||||||||||||||||||||||||||||||    
T  19321913 tagtttaaatttaattttttattaaagtatc 19321943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 27085693 - 27085751
Alignment:
Q  26 ttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||| ||||||||  | ||||||||||||||||| |||||||||| || ||||||||||    
T  27085693 tttttggatatattgtgtatgtaattgactaattatcactttcttaatcatcaatatta 27085751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 10154550 - 10154579
Alignment:
Q  289 tagtttaaatttaattttttattaaagtat 318  Q
    ||||||||||||||||||||||||||||||    
T  10154550 tagtttaaatttaattttttattaaagtat 10154579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 39796743 - 39796679
Alignment:
Q  22 ctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||| ||||||||  ||||||||||||||||||  ||||| |||| ||  |||||||||||    
T  39796743 ctctttttgggatatattgtatatgtaattgactaatcatcactctcttaatcgtcaatattact 39796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 10833 - 10918
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttatgatcaatattact 86  Q
    |||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||| ||| |||||||||| || |||||||||    
T  10833 aattgactaagtaatgatgttttctatttatgatatatcatatatgtaattgactaatcgtcgctttctttattattaatattact 10918  T

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Target: scaffold0240; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 11104 - 11165
Alignment:
Q  293 ttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttcc 354  Q
    ||||||||| ||||||||| ||||||||   | |||||||||||| ||||||||||||||||    
T  11104 ttaaatttatttttttattgaagtatcccagccgtatcgtatcttgaattttaaaattttcc 11165  T

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Target: scaffold0067 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 4767 - 4833
Alignment:
Q  287 tgtagtttaaatttaattttttattaaagtatcctgactgtatcgtatcttaaattttaaaattttc 353  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||    
T  4767 tgtagtttaaatttaattttatattaaagtatcccggctgtatcgtatcttaaattttgaaattttc 4833  T

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Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36573 - 36645
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttat 73  Q
    |||||||||| ||||| |||||| ||||| || |||||||||||||||||||||||||| | |||||||||||    
T  36573 aattgactaaataatgatgttctttttttggggtatatcatatatgtaattgactaatttttactttctttat 36645  T

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Target: scaffold0886 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2959 - 2887
Alignment:
Q  1 aattgactaagtaatggtgttctctttttaggatatatcatatatgtaattgactaattgtcactttctttat 73  Q
    |||||||| | ||||| |||||| ||||| || ||||||||||||||||| |||||||| | |||||||||||    
T  2959 aattgactgaataatgatgttctttttttggggtatatcatatatgtaatcgactaatttttactttctttat 2887  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 2423031 - 2423069
Alignment:
Q  46 gtaattgactaattgtcactttctttatgatcaatatta 84  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2423031 gtaattgactaattgtcactttctttattatcaatatta 2423069  T

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