View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_43 (Length: 444)
Name: NF1172_low_43
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 113 - 438
Target Start/End: Original strand, 8052821 - 8053137
Alignment:
| Q |
113 |
gagggaagacatcgtaaaatgttaaaaagttaactttcagatgttaaattaccccacgacatgcatcaataagttcttgaaataaacttttagataaaga |
212 |
Q |
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| T |
8052821 |
gagggaagacatcgtaaaatgttaaaaagttaactttcagatgttaaattaccccacgacatgcatcaataagttcttgaaataaacttttagataaaga |
8052920 |
T |
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| Q |
213 |
cattctgagaaggaaaaattgaaaacacttaatataaatatatcaattggataagatagtaaactaaataatctcttccggcttaactagatatcatgaa |
312 |
Q |
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| T |
8052921 |
cattctgagaaggaaaaattgaaaacac---------atatatcaattggataagatagtaaactaaataatctcttccggcttaactagatatcatgaa |
8053011 |
T |
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| Q |
313 |
tttgaatccaattttaagaatgcagtgcagttaaatttcttgatggagagatttttcatctattgcaatcatatccaaggttataaattaatctctacaa |
412 |
Q |
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| T |
8053012 |
tttgaatccaattttaagaatgcagcgcagttaaatttcttgatggagagatttttcatctattgcaatcatatccaagattataaattaatctctacaa |
8053111 |
T |
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| Q |
413 |
ttatgcgtagaagatattcatctcac |
438 |
Q |
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| T |
8053112 |
ttatgcgtagaagatattcatgtcac |
8053137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 34021996 - 34021922
Alignment:
| Q |
5 |
cacaagcaactatcagagccaaataatcttcaaaaataaatgagacctaagcaaattttaatatataaggtttat |
79 |
Q |
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| T |
34021996 |
cacaagcaactatcagagccaaataatcttcaaaaataaatgagacctaagcaaattttaatatataaggtttat |
34021922 |
T |
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