View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_44 (Length: 443)
Name: NF1172_low_44
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_44 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 30302610 - 30303033
Alignment:
| Q |
20 |
aaatgttggtgcaaattaaccatatagataccatttctatagttataaatagtaccctttgatctcaatactcactcatctctcatcatataaagtgaaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30302610 |
aaatgttggtgcaaattaatcatatagataccatttctatagttataaatagtaccctttgatctcaatactcactcatctctcatcatataaagtgaaa |
30302709 |
T |
|
| Q |
120 |
ataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatc |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30302710 |
ataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaatttttttcctagcctcagtttgtgtctcttctaaagacgatc |
30302809 |
T |
|
| Q |
220 |
aacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30302810 |
aacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaatgaaaatggtcacattcgtctccttcaaaggttcgacaa |
30302909 |
T |
|
| Q |
320 |
acgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggacttt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
30302910 |
acgttcaaaaatatttgagaatctccaaaactatcgccttttggaataccactccaaacctcacactctctttcttccacaacacaatgatgctgacttc |
30303009 |
T |
|
| Q |
420 |
atccttgcagtccttagtggtaat |
443 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30303010 |
atccttgcagtccttagtggtaat |
30303033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 30289927 - 30290347
Alignment:
| Q |
20 |
aaatgttggtgcaaattaaccatatagataccatttctatagttataaatagtaccctttgatctcaatactcactcatctctcatcatat-aaagtgaa |
118 |
Q |
| |
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|||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30289927 |
aaatgttggtgcaaat-aatcatatagctaccatttctaaagctataaatagtaccctttcatctcaatactcactcatctctcatcatatcaaagtgaa |
30290025 |
T |
|
| Q |
119 |
aataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgat |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||| |
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| T |
30290026 |
aataattcaaatcattatggcaatcaaagctccatttcaacttttgatgctgctgggaatttttttcctagcctcagtttgtgtctcttctagatccgat |
30290125 |
T |
|
| Q |
219 |
caacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgaca |
318 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30290126 |
cat---gatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaagattcgaca |
30290222 |
T |
|
| Q |
319 |
aacgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactt |
418 |
Q |
| |
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|||| || ||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30290223 |
aacgctccaaaatatttgaaaatctccaaaactaccgtcttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgactt |
30290322 |
T |
|
| Q |
419 |
tatccttgcagtccttagtggtaat |
443 |
Q |
| |
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|||||||||||| |||||||||||| |
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|
| T |
30290323 |
tatccttgcagtgcttagtggtaat |
30290347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 30297421 - 30297847
Alignment:
| Q |
20 |
aaatgttggtgcaaattaaccatatagataccatttctatagttataaatagtaccctttgatctcaatactcactcatctc-----tcatcatat-aaa |
113 |
Q |
| |
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||||||| ||||| |||| ||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||| |||||||| ||| |
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| T |
30297421 |
aaatgtttgtgcatgttaatcatatagctaccatttctattcctataaata---ccctttgatctcaatactccctcatctcatctctcatcatagcaaa |
30297517 |
T |
|
| Q |
114 |
gtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||| || |
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| T |
30297518 |
gtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttgatgctgctgggaatttttttcctggcctcagtttgtgtatcttctagag |
30297617 |
T |
|
| Q |
214 |
acgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggtt |
313 |
Q |
| |
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| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
30297618 |
atgatcgacacgatcaagagaacccttttttctttaatgctaaccatttccaaactctttttgagaacgaaaatggtcacattcgtctcctccaaaggtt |
30297717 |
T |
|
| Q |
314 |
cgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcg |
413 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30297718 |
tgacaaacgttccaaaatatttgagaatcttcaaaactatcgccttttggaatatcactccaaacctcacactctctttcttccacaacacaatgatgct |
30297817 |
T |
|
| Q |
414 |
gactttatccttgcagtccttagtggtaat |
443 |
Q |
| |
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||||| ||||||||||| |||||||||||| |
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| T |
30297818 |
gacttcatccttgcagtgcttagtggtaat |
30297847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 127 - 443
Target Start/End: Original strand, 30313584 - 30313897
Alignment:
| Q |
127 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
226 |
Q |
| |
|
|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||||||||||||||||||| | |||||| || |
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| T |
30313584 |
aaatcaatatggcaatcaaagctccttcttcacttttgatgctgcttggaactgttttcctagcctcagtttgtgtctcttctagatctgatcaa---ga |
30313680 |
T |
|
| Q |
227 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttca |
326 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||| | || |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| |
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|
| T |
30313681 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaacgaaaatggtcacattcggcttctccaaaggtttgacaaacgttcc |
30313780 |
T |
|
| Q |
327 |
aaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttg |
426 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
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| T |
30313781 |
aaaatatttgagaatctccaaaactatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttg |
30313880 |
T |
|
| Q |
427 |
cagtccttagtggtaat |
443 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
30313881 |
cagtccttagtggtaat |
30313897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 127 - 443
Target Start/End: Original strand, 30285077 - 30285390
Alignment:
| Q |
127 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
226 |
Q |
| |
|
|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||| ||||||||||||||| | |||||| || |
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|
| T |
30285077 |
aaatcaatatggcaatcaaagctccttgttcacttttgatgctgcttggaattgtattcctagcctcaatttgtgtctcttctagatctgatcaa---ga |
30285173 |
T |
|
| Q |
227 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttca |
326 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||| | || |||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
30285174 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaatgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttcc |
30285273 |
T |
|
| Q |
327 |
aaaatatttgagaatctccaaaactatcgacttttggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttg |
426 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
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|
| T |
30285274 |
aaaatatttgaaaatcttcaaaactaccgactcttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttg |
30285373 |
T |
|
| Q |
427 |
cagtccttagtggtaat |
443 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
30285374 |
tagtcgttagtggtaat |
30285390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 30313510 - 30313546
Alignment:
| Q |
57 |
tatagttataaatagtaccctttgatctcaatactca |
93 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30313510 |
tatagctataaatagtaccctttgatctcaacactca |
30313546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 440
Target Start/End: Original strand, 46808707 - 46808886
Alignment:
| Q |
261 |
ttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgacttt |
360 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||| | |||||||| |||||||||||||| ||||| | ||| | ||||||| || |||| |
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|
| T |
46808707 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttcaaaatttaaaaaactaccgtcttt |
46808806 |
T |
|
| Q |
361 |
tggaataccactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggt |
440 |
Q |
| |
|
|||| ||| ||||||| |||||| |||| || || || |||| |||||| ||||||||||||| |||||| |||||| |
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| T |
46808807 |
tggagtacagagccaaaccccacaccatcttcctcccccaccacactgatgccgactttatccttgtagtcctcagtggt |
46808886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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