View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_5 (Length: 752)
Name: NF1172_low_5
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_5 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 30 - 740
Target Start/End: Original strand, 8761773 - 8762483
Alignment:
| Q |
30 |
gttatggagattcttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagagccattatacttc |
129 |
Q |
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| T |
8761773 |
gttatggagattcttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagaaccattatacttc |
8761872 |
T |
|
| Q |
130 |
tgcacattttccacaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8761873 |
tgcacattttccacaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctc |
8761972 |
T |
|
| Q |
230 |
ttccactccctcccctaatatcagaaatagaatccagaccaaaccctccttgaaccaaaccaaaattttcattcacaaaagatctacaattcttattttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8761973 |
ttccactccctcccctaatatcagaaatagaatccagaccaaaccctccttgaaccaaaccaaaattttcattcacaaaagatctacaattcttattttc |
8762072 |
T |
|
| Q |
330 |
attttgacccctttcgttgaagcaaaaactattgttatttgcacttaaaccccttaatccattattcatagttccaattccaaccatttctgctacatta |
429 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8762073 |
attttgaccccttttgttgaagaaaaaactattgttatttgcactagaatcccttaatccattattcatagttccaattccaaccatttctgctctatta |
8762172 |
T |
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| Q |
430 |
ttcagctgaattccaaaatggttattgttttttgcatcagaagtaaacttgtgaggcataatattagggcttgccaaagatccaaagttagaagttttaa |
529 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8762173 |
ttcagctgaattccaaaatggttattgtttcttgcatcagaagtaaacttgtgaggcataatattagggcttgccaaagatccaaagttagaagttttaa |
8762272 |
T |
|
| Q |
530 |
caccatgattctggtttctaatgtcaccacatttaaaatcccttgttaagaaacttgaagaagaagaaaccatcaatccttgttcacctctatatgatga |
629 |
Q |
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| T |
8762273 |
caccatgattctggtttctaatgtcaccacatttaaaatcccttgttaagaagcttgaagaagaagaaaccatcaatccttgttcacctctatatgatga |
8762372 |
T |
|
| Q |
630 |
aaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacctgttttgaccatgcccattattc |
729 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| |
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| T |
8762373 |
aaagctagtggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagagcttattccaaacctgttttgatcatggccactattc |
8762472 |
T |
|
| Q |
730 |
tccgcaacagc |
740 |
Q |
| |
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||| ||||||| |
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| T |
8762473 |
tccacaacagc |
8762483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 38 - 738
Target Start/End: Original strand, 8788328 - 8789012
Alignment:
| Q |
38 |
gattcttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagagccattatacttctgcacatt |
137 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||| ||| |||| |
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| T |
8788328 |
gattcttgtcatcagccattaagaaatcagaattgttgaattcaattttgttgaactcaacctcattagtgaaagtagaatcattaaacttttgctcatt |
8788427 |
T |
|
| Q |
138 |
ttccacaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactc |
237 |
Q |
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| T |
8788428 |
ttccacaacatttccatctaatttatgctgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctggaaactctcttccactc |
8788527 |
T |
|
| Q |
238 |
cctcccctaatatcagaaatagaatccagaccaaaccctccttgaaccaaaccaaaattttcattcacaaaagatctacaattcttattttcattttgac |
337 |
Q |
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| T |
8788528 |
cctcccctaatatcaaaaatagaatccagacgaaacactccttgaaccaaaccaaaattttcattcacaaaagatctaaaattcatattttcattttgac |
8788627 |
T |
|
| Q |
338 |
ccctttcgttgaagcaaaaactattgttatttgcacttaaaccccttaatccattattcatagttccaattccaaccatttctgctacattattcagctg |
437 |
Q |
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|||||| |||||||||| |||| | | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8788628 |
tcctttc---------------attgttattttcact-agagcccttaatccattgttcatagttccaattccaaccatttctgctccattattcagctg |
8788711 |
T |
|
| Q |
438 |
aattccaaaatggttattgttttttgcatcagaagtaaacttgtgaggcataatattagggcttgccaaagatccaaagttagaagttttaacaccatga |
537 |
Q |
| |
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|||||||||| | ||||||||| || |||||||||||||||| |||||||| | ||||| ||| ||| |||||||||| ||| ||||||||| ||| |
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| T |
8788712 |
aattccaaaaggattattgtttcttacatcagaagtaaacttatgaggcatgacattagttcttataaaaaatccaaagtttgaatttttaacacggtga |
8788811 |
T |
|
| Q |
538 |
ttctggtttctaatgtcaccacatttaaaatcccttgttaagaaacttgaagaagaagaaaccatcaatccttgttcacctctatatgatgaaaagctag |
637 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8788812 |
ttttggtttctaatgtcaccaaatttaaaatcccttgctaagaaacttgaagaagaagaaaccatcaatccttgttcacctctatatgatgaaaagctag |
8788911 |
T |
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| Q |
638 |
aggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacctgttttgaccatgcccattattctccgcaac |
737 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8788912 |
tggaagcaccatcatggaatgaggtttttgcttgaaaaaatggaaggtttgaagagtttattccaaacctgttttgaccatggccattattctccgcaac |
8789011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 690
Target Start/End: Complemental strand, 9554 - 9504
Alignment:
| Q |
640 |
gaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaa |
690 |
Q |
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| T |
9554 |
gaagcaccatcattgaaggagtttttcgcctgaaaaactgaaaggtttgaa |
9504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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