View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_51 (Length: 425)
Name: NF1172_low_51
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_51 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 34292808 - 34292400
Alignment:
| Q |
16 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292808 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34292709 |
T |
|
| Q |
116 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatg |
215 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34292708 |
cacctaatatgcaaaaatgggtctatgatgtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagagttaaaaatagcaaaaaatg |
34292609 |
T |
|
| Q |
216 |
ctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaaggagaaaa |
315 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
34292608 |
ctttggttgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagg-aagaagaaaa |
34292510 |
T |
|
| Q |
316 |
caaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataaag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34292509 |
caaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaag |
34292410 |
T |
|
| Q |
416 |
aggtcataga |
425 |
Q |
| |
|
|||||||||| |
|
|
| T |
34292409 |
aggtcataga |
34292400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 224 - 425
Target Start/End: Complemental strand, 34567148 - 34566948
Alignment:
| Q |
224 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaaggagaaaacaaatttc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34567148 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaa-gaagaaaacaaatttc |
34567050 |
T |
|
| Q |
324 |
aagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataaagaggtcata |
423 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34567049 |
aagttatttcataccccaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaagaggtcata |
34566950 |
T |
|
| Q |
424 |
ga |
425 |
Q |
| |
|
|| |
|
|
| T |
34566949 |
ga |
34566948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 34567319 - 34567147
Alignment:
| Q |
16 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567319 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34567220 |
T |
|
| Q |
116 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatga |
188 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
34567219 |
cacctaatgtgcaaaaatggctctatgatgtcacaacaattgaaaatgagttgcaaaagtggctctctgatga |
34567147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 34555494 - 34555400
Alignment:
| Q |
211 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagga |
305 |
Q |
| |
|
||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||| |
|
|
| T |
34555494 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgaatatattataaggttgaagga |
34555400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 52 - 425
Target Start/End: Complemental strand, 15896996 - 15896623
Alignment:
| Q |
52 |
aaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaa |
151 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || | |||||||||||| ||| ||||||||| ||| | |||||||||||||| | ||| ||||||| |
|
|
| T |
15896996 |
aaaatgatgaaacaagcattgcaaacaaaggtggacaatgaaagaaggaagggacatgaaattgaacccatcgtgcaaaaatggctatctgatgtgacaa |
15896897 |
T |
|
| Q |
152 |
caattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatgctttggtggacaatgctcaaatttagcatttaatta |
251 |
Q |
| |
|
|||||| || ||| |||||| ||| ||||| ||||||||| | |||| || | || ||||| |||||||||||||| ||| || ||||||||||||| |
|
|
| T |
15896896 |
ttattgaaaatgagtggcaaaaatggatctctaatgaaaataatgttaacaagaagaagaaatgttttggtggacaatgttcagatatagcatttaatta |
15896797 |
T |
|
| Q |
252 |
ttcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaaggagaaaacaaatttcaagttatttcataccctaaacctccatt |
351 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||| ||||||||||| |||||| | | | ||||||||||| ||| ||| || ||||||||| || |||| |
|
|
| T |
15896796 |
ctcattgggaaagcaagcaactaaaaggatagaatatattacaagcctgaagg-aggaaaaaaacaaatttaaagatatatcttaccctaaagcttcatt |
15896698 |
T |
|
| Q |
352 |
aacacttggatctacctatacaaaaaatatcaagagcttattgtcttgggagaagattataa-agaggtcataga |
425 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||| |||||||| | || || ||||||| |||||||||||| |
|
|
| T |
15896697 |
aacacttggatctaccttcacaaaagatgtcaagagcctattgtctagagaaaaaattataacagaggtcataga |
15896623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 129302 - 129386
Alignment:
| Q |
211 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaa |
295 |
Q |
| |
|
||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| |||| ||||||||| |
|
|
| T |
129302 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgagtatattacaa |
129386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University