View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_52 (Length: 425)
Name: NF1172_low_52
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 1767477 - 1767866
Alignment:
| Q |
30 |
ttttcatttgtaacagttgtttgtttcatcaataaatcagcatcgctcaaaaagggaggtaaaggtctcactagagataaagcaagtgtcaaatcctgca |
129 |
Q |
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| T |
1767477 |
ttttcatttgtaacagttgtttgtttcatcaataaatcagcatcgctcaaaaagggaggtaaaggtctcactagagataaagcaagtgtcaaatcctgca |
1767576 |
T |
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| Q |
130 |
tatagaaattgaatttgctttaattaagtattaataataatcaatataaatcatatttacattatagattacataaacattagctaaaaatcaaatcaaa |
229 |
Q |
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| T |
1767577 |
tatagaaattgaatttgccttaattaagtattaataataatcaatataaatcatatttacattatagattacataaacattagctaaaaatcaaatcaaa |
1767676 |
T |
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| Q |
230 |
atacataatatgaatttgatttttctattttgtccaattgataaaactatttacttgagatggtgataattggtacattctggatgctaacaaatcaagt |
329 |
Q |
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| T |
1767677 |
atacataatatgagtttgatttttctattttgtccaattgataaaactatttacttgagatggtgataattggtacattctggatgctaacaaatcaagt |
1767776 |
T |
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| Q |
330 |
ccgtcagacgagaggatcggagccttgtctggcccgttaacgatgaaattttgtttgtccaaaattgagcccactcttctcctatgctac |
419 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1767777 |
ccgttagacgagaggatcggagctttgtctggcccgttaacgatgaaattttgtttgtccaaaattgagcccactcttctcctacgctac |
1767866 |
T |
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