View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_53 (Length: 419)
Name: NF1172_low_53
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_53 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 138329 - 138656
Alignment:
| Q |
1 |
ctccgtcgcctttgactggcgatcaattatacgaaaaaagtcaagcttttgagcactaaatatggaaagcctttttcaggggaacttgtcactggtggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
138329 |
ctccgtcgcctttgactggcgatcaattatacgaaaaa-gtcaagcttttgagcagtaaatttggaaagcctttttcaggggaacttgtcactggtggat |
138427 |
T |
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| Q |
101 |
ggnnnnnnnngtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgnnnnnnntgtttttgatag |
200 |
Q |
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| T |
138428 |
ggaaaaaaaagtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgaaaaaaatgtttttgatag |
138527 |
T |
|
| Q |
201 |
tgtcgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggccg |
300 |
Q |
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| T |
138528 |
tgtcgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggccg |
138627 |
T |
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| Q |
301 |
gttaagaaggatgggaagcgtacatttct |
329 |
Q |
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| T |
138628 |
gttaagaaggatgggaagcgtacatttct |
138656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 143553 - 143850
Alignment:
| Q |
1 |
ctccgtcgcctttgactggcgatcaattatacgaaaaaagtcaagcttttgagcactaaatatggaaagcctttttcaggggaacttgtcactggtggat |
100 |
Q |
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| T |
143553 |
ctccgtcgcctttgaatggcgatcaattatacgaaaaa-gtcaagcttttgagcaataaatttggaaagcctttttcaggagaacttgtcactggtggat |
143651 |
T |
|
| Q |
101 |
ggnnnnnnnngtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgnnnnnnntgtttttgatag |
200 |
Q |
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| T |
143652 |
ggaaaaaaaagtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgaaaaaaatgtttttgatag |
143751 |
T |
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| Q |
201 |
tgtcgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggcc |
299 |
Q |
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| T |
143752 |
tgttgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggcc |
143850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 20749456 - 20749783
Alignment:
| Q |
1 |
ctccgtcgcctttgactggcgatcaattatacgaaaaaagtcaagcttttgagcactaaatatggaaagcctttttcaggggaacttgtcactggtggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20749456 |
ctccgtcgcctttgactggcgatcaattatacgaaaaa-gtcaagcttttgagcagtaaatttggaaagcctttttcaggggaacttgtcactggtggat |
20749554 |
T |
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| Q |
101 |
ggnnnnnnnngtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgnnnnnnntgtttttgatag |
200 |
Q |
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| T |
20749555 |
ggaaaaaaaagtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattgaaaaaaatgtttttgatag |
20749654 |
T |
|
| Q |
201 |
tgtcgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggccg |
300 |
Q |
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| T |
20749655 |
tgtcgttggtacattactcaatataccaggaaagtctaaggatggcatcaatgcaaggttagacatgcaaagtatgggattaaggaatgaactgaggccg |
20749754 |
T |
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| Q |
301 |
gttaagaaggatgggaagcgtacatttct |
329 |
Q |
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| T |
20749755 |
gttaagaaggatgggaagcgtacatttct |
20749783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 129246 - 129176
Alignment:
| Q |
111 |
gtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattg |
181 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
129246 |
gtcaattttctttgaactcccatattggaagtcattatatgtaagacatttccttgatgtgatgcatattg |
129176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 34210622 - 34210552
Alignment:
| Q |
111 |
gtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattg |
181 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
34210622 |
gtcaattttctttgaactcccatattggaagtcattatatgtaagacatttccttgatgtgatgcatattg |
34210552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 14652206 - 14652136
Alignment:
| Q |
111 |
gtcaattttctttgaattgccatattggaagtcattgtatgtacgacatttccttgatgtgatgcatattg |
181 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
14652206 |
gtcaattttctttgaactcccatattggaagtcattatatgtaagacatttccttgatgtgatgcatattg |
14652136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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