View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_56 (Length: 414)
Name: NF1172_low_56
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 111 - 394
Target Start/End: Original strand, 5897838 - 5898120
Alignment:
| Q |
111 |
gcatatataagcacttgttgaaaaggaacaaaattcacaatctaacttggtaatggtgccnnnnnnncctgaaaatctctcattggcatggaattcatgc |
210 |
Q |
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| T |
5897838 |
gcatatataagcacttgttgaaaaggaacaaatttcacaatctaacttggtaatggtgcctttttt-cctgaaaatctctcattggcatggaattcatgc |
5897936 |
T |
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| Q |
211 |
ttcattaattctatatatgaggcagccacgttatatggataagtacaatttagttcttttccttgattcttgatcagcaactgaacacgtatagttctct |
310 |
Q |
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| T |
5897937 |
ttcattaattctatatatgaggcagccacgttatatggatgagtacaatttagttcttttccttgattcttgatcagcaactgaacacgtatagttctct |
5898036 |
T |
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| Q |
311 |
tcttcttcacgtttgaattggattgaacaataaccaagcaacgaaatttcatagattttttgtagatagtaaaagtttgtatca |
394 |
Q |
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| T |
5898037 |
tcttcttcacgtttgaattggattgaccaataaccaagcaacgaaatttcatagattttttgtagatagttaaagtttgtatca |
5898120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5897649 - 5897762
Alignment:
| Q |
1 |
ctcgatatataaatggatatacatcgagttaactaactagtggaagaacacaattatgtttatagttgaaacnnnnnnngttggaagtagtggtgaccca |
100 |
Q |
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| T |
5897649 |
ctcgatatataaatggatatacatcgagttaactaactagtggaagaacacaattatgtttatagttgaaacaaaaaaagttggaagtagtggtgaccca |
5897748 |
T |
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| Q |
101 |
caaaatctgtgcat |
114 |
Q |
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| T |
5897749 |
caaaatctgtgcat |
5897762 |
T |
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