View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_6 (Length: 673)
Name: NF1172_low_6
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 14 - 599
Target Start/End: Complemental strand, 44730105 - 44729525
Alignment:
| Q |
14 |
gaacctagaaatgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtcgtcgaattctttcgatcgct |
113 |
Q |
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| T |
44730105 |
gaacctagaaatgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtagtcgaattctttcgatcgct |
44730006 |
T |
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| Q |
114 |
aactcagctcttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaat |
213 |
Q |
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| T |
44730005 |
aactcagctcttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaag |
44729906 |
T |
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| Q |
214 |
atgaaactagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtag |
313 |
Q |
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| T |
44729905 |
ttgaaactagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtag |
44729806 |
T |
|
| Q |
314 |
gcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttatt |
413 |
Q |
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| T |
44729805 |
gcaattatcagggaaagggtggaagcctagcttggatacaattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttatt |
44729706 |
T |
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| Q |
414 |
ggtgcaaagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctgnnnnnn |
513 |
Q |
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| T |
44729705 |
ggtgcaaagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctgtttttt |
44729606 |
T |
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| Q |
514 |
nnnncttcactttcttctctgtatatctctaatgagccacagcttaatttaatcacttgtgacaacactatttctacttctctttt |
599 |
Q |
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| T |
44729605 |
-----ttcactttcttctctgtatatctctaatgagccacagcttaatttaatcacttgtgacaacactatttctacttctctttt |
44729525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 39084251 - 39084314
Alignment:
| Q |
304 |
atttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaa |
367 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
39084251 |
atttgaataggcagatttcagggaaagggtggaagcctagcttggatactattaaggagaagaa |
39084314 |
T |
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