View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_63 (Length: 390)

Name: NF1172_low_63
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_63
NF1172_low_63
[»] chr2 (6 HSPs)
chr2 (92-378)||(2590411-2590696)
chr2 (92-294)||(18739117-18739320)
chr2 (112-303)||(21189331-21189522)
chr2 (112-294)||(35969283-35969461)
chr2 (142-303)||(14433596-14433758)
chr2 (151-282)||(1043114-1043244)
[»] chr8 (11 HSPs)
chr8 (185-378)||(21185243-21185436)
chr8 (92-294)||(1788905-1789108)
chr8 (113-303)||(17028285-17028475)
chr8 (113-303)||(17558721-17558911)
chr8 (113-304)||(38678618-38678805)
chr8 (169-303)||(39655696-39655830)
chr8 (113-248)||(38676239-38676373)
chr8 (112-269)||(21347041-21347198)
chr8 (92-123)||(21185436-21185467)
chr8 (232-294)||(31183750-31183812)
chr8 (262-304)||(38676893-38676935)
[»] chr6 (6 HSPs)
chr6 (112-294)||(19697851-19698034)
chr6 (211-303)||(6591846-6591938)
chr6 (113-215)||(15517971-15518073)
chr6 (240-293)||(15518074-15518127)
chr6 (231-294)||(24044939-24045001)
chr6 (231-304)||(24041626-24041698)
[»] chr7 (11 HSPs)
chr7 (99-292)||(11673917-11674110)
chr7 (181-294)||(31210081-31210194)
chr7 (181-303)||(31206623-31206745)
chr7 (172-294)||(39426457-39426579)
chr7 (115-291)||(5434870-5435047)
chr7 (169-294)||(3850545-3850671)
chr7 (231-303)||(22301148-22301220)
chr7 (233-369)||(32352363-32352495)
chr7 (181-304)||(15569565-15569687)
chr7 (231-294)||(13815787-13815849)
chr7 (175-331)||(2609571-2609726)
[»] chr4 (10 HSPs)
chr4 (115-294)||(6667725-6667902)
chr4 (134-304)||(13010529-13010698)
chr4 (115-294)||(6671397-6671568)
chr4 (203-293)||(895463-895553)
chr4 (181-303)||(44643451-44643572)
chr4 (231-303)||(20058100-20058172)
chr4 (236-363)||(11914000-11914126)
chr4 (148-316)||(31767432-31767599)
chr4 (112-159)||(20058203-20058250)
chr4 (231-316)||(43287897-43287982)
[»] chr1 (11 HSPs)
chr1 (123-303)||(24981159-24981339)
chr1 (113-312)||(12141640-12141839)
chr1 (118-274)||(1953623-1953779)
chr1 (118-294)||(47580330-47580508)
chr1 (181-293)||(4242576-4242688)
chr1 (147-369)||(43254080-43254298)
chr1 (134-250)||(51465448-51465562)
chr1 (221-328)||(9111513-9111620)
chr1 (118-285)||(38825492-38825659)
chr1 (154-266)||(39197184-39197297)
chr1 (134-294)||(38828693-38828853)
[»] scaffold0014 (1 HSPs)
scaffold0014 (112-294)||(82550-82733)
[»] chr5 (5 HSPs)
chr5 (115-303)||(18594747-18594935)
chr5 (113-303)||(26703014-26703205)
chr5 (113-303)||(26972747-26972938)
chr5 (112-292)||(39292035-39292208)
chr5 (231-266)||(13292002-13292037)
[»] scaffold0028 (2 HSPs)
scaffold0028 (181-303)||(127699-127820)
scaffold0028 (181-294)||(110120-110232)
[»] scaffold0076 (1 HSPs)
scaffold0076 (182-294)||(6766-6877)
[»] chr3 (4 HSPs)
chr3 (112-331)||(19930005-19930223)
chr3 (171-274)||(11634196-11634300)
chr3 (231-331)||(42253531-42253630)
chr3 (231-316)||(9372196-9372280)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 92 - 378
Target Start/End: Original strand, 2590411 - 2590696
Alignment:
Q  92 ttcatgtttttctgtactctcaattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctg 191  Q
    ||||||||||| ||||||| |||||||||||||||||| || ||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  2590411 ttcatgttttt-tgtactcacaattattttctctcatctaaaatattgagtttctgggttatatctcctgatatctatgagataaatttgagttgttctg 2590509  T
Q  192 tcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtca 291  Q
    ||| ||||| |||||||||||||||||| |||||| || |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  2590510 tcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtca 2590609  T
Q  292 cgctttaggttattgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaatggcttca 378  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  2590610 cgcctcaggttattgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaccggcttca 2590696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 92 - 294
Target Start/End: Complemental strand, 18739320 - 18739117
Alignment:
Q  92 ttcatgtttttctgtactctcaattattttctctcatccaagatattgaa-tttctaggttacatctcctgatatgtatgagataaatttgagttgttct 190  Q
    |||||||||||||||||   ||||||||||||||||||||| |||||||  ||||| ||||||||||| |||||| | ||||||||||| ||| ||||||    
T  18739320 ttcatgtttttctgtacgtacaattattttctctcatccaaaatattgaggtttctgggttacatctcatgatatatttgagataaattcgagctgttct 18739221  T
Q  191 gtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtc 290  Q
    |||| |||||||||||||||||||||||| |||||  || |||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  18739220 gtcacctccgattatgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtc 18739121  T
Q  291 acgc 294  Q
    ||||    
T  18739120 acgc 18739117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 21189331 - 21189522
Alignment:
Q  112 caattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||| ||  ||||||  |||| |||||||||||| | ||| | |||||| | ||||||||||||||||| ||||  ||||||||||    
T  21189331 caattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttctgtcacctccagttatgattca 21189430  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||||||| | |||| || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||||||    
T  21189431 taacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 21189522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 294
Target Start/End: Complemental strand, 35969461 - 35969283
Alignment:
Q  112 caattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||| || ||||||| |||||||||||||||| | | ||| | |||||||||||||||||||||||| | ||||  ||||||||||    
T  35969461 caattattttctctcatctaaaatattgagtttctaggttacatcttcggttatctttgagataaatttgagttgttctgttacctcctgttatgattca 35969362  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    |||||||| |||||| || || | ||    ||||||||||| |||||| ||||||||| |||| |||||||||||||||||||    
T  35969361 taacggggaagaactgtt-taacatg---tgatatgcgcttttgaggcggataaaatcttcaaggacagtgactatgtcacgc 35969283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 303
Target Start/End: Complemental strand, 14433758 - 14433596
Alignment:
Q  142 tttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctggga 240  Q
    |||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||  | |||||||||||||||||| ||||| | || |||| |||||    
T  14433758 tttctaggttacatctcctgatatctttgagataaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttggga 14433659  T
Q  241 ggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
     ||| ||  |||||||||| |||||||||| ||| ||||||||||||||||||| | ||||||    
T  14433658 agatgtgtacttatgaggcggataaaatccacaaggacagtgactatgtcacgcctcaggtta 14433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 1043114 - 1043244
Alignment:
Q  151 tacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgc 250  Q
    ||||||||||| ||| | |||||| |||||||  |||||||||| | |||||||||||||||||| ||| |||||  || ||||||||||||||||||||    
T  1043114 tacatctcctgttatctttgagatgaatttgacctgttctgtcacccccgattatgattcataac-gggaagaacggttgtatcctgggaggatatgcgc 1043212  T
Q  251 ttatgaggcagataaaatcctcaaagacagtg 282  Q
     |||||| | |||||||||||||| |||||||    
T  1043213 ctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 185 - 378
Target Start/End: Complemental strand, 21185436 - 21185243
Alignment:
Q  185 tgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgac 284  Q
    |||| ||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  21185436 tgttttgtcacctccggttatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 21185337  T
Q  285 tatgtcacgctttaggttattgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaatggcttca 378  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21185336 tatgtcacgcttcaggttattgaacggtttaccatgttgcaggtcatctccgttcatgacttcttgtttgtttacttcaccattaatggcttca 21185243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 92 - 294
Target Start/End: Complemental strand, 1789108 - 1788905
Alignment:
Q  92 ttcatgtttttctgtactctcaattattttctctcatccaagatattgaa-tttctaggttacatctcctgatatgtatgagataaatttgagttgttct 190  Q
    ||||||||||||||||| | |||| |||||||||||||||| |||||||  ||||| ||||||||||| |||||| | ||||||||||||||||||||||    
T  1789108 ttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttct 1789009  T
Q  191 gtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtc 290  Q
    |||| ||||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  1789008 gtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtc 1788909  T
Q  291 acgc 294  Q
    ||||    
T  1788908 acgc 1788905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 17028285 - 17028475
Alignment:
Q  113 aattattttctctcatccaagat-attgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||| | ||  ||| ||||||| |||| ||||| ||||| ||||||||||    
T  17028285 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgt-atatatttgagctgttgtgtcacctccggttatgattca 17028383  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||||||| |||||| | |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||| | ||||||    
T  17028384 taacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17028475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 17558721 - 17558911
Alignment:
Q  113 aattattttctctcatccaagat-attgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||| | ||  ||| ||||||| |||| ||||| ||||| ||||||||||    
T  17558721 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgt-atatatttgagctgttgtgtcacctccggttatgattca 17558819  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||||||| |||||| | |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||| | ||||||    
T  17558820 taacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17558911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 38678618 - 38678805
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||| || ||| | | |||||||||||||||||||||||| |||||||||||||||||    
T  38678618 aattattttctctcatccaaaatattgaatttct-ggttgcatctcttgttatctttaagataaatttgagttgttctgtcacctccgattatgattcat 38678716  T
Q  213 aacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttat 304  Q
    |||||||   |||| || |||||||  |||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| | |||||||    
T  38678717 aacgggg--aaactgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgtcacgcctcaggttat 38678805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 39655830 - 39655696
Alignment:
Q  169 tgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaat 268  Q
    ||||||||||||||| ||||||||||  |||| |||||||||||||||| | |||||| || |||| ||||||||||||| |||||||||| ||||||||    
T  39655830 tgagataaatttgagctgttctgtcacatccggttatgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcggataaaat 39655731  T
Q  269 cctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||||| ||||||||||||||||||| | ||||||    
T  39655730 cctcaaggacagtgactatgtcacgcctcaggtta 39655696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 38676239 - 38676373
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    |||||||||||||||||||| ||||||| ||||| ||||  |||||||| ||| | | | |||||||||||||||||||||| |||||||||||||||||    
T  38676239 aattattttctctcatccaaaatattgagtttct-ggttgtatctcctgttatctttaaaataaatttgagttgttctgtcacctccgattatgattcat 38676337  T
Q  213 aacgggggagaactattatatcctgggaggatatgc 248  Q
    ||||||| |||| | || ||||||||||||||||||    
T  38676338 aacggggaagaattgttgtatcctgggaggatatgc 38676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 21347041 - 21347198
Alignment:
Q  112 caattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||||| | | | | |||||| | ||| |||||||| |||| || |  ||||||||||    
T  21347041 caattattttctctcatccaaagtattgagtttgtgggttacatctccggttgtctttgagattattttcagttgttccgtcaccttcatttatgattca 21347140  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatc 269  Q
    ||||| |  |||||  || |||| |||||||||||| ||||||||||| |||||||||    
T  21347141 taacgtgaaagaacagttgtatcttgggaggatatgtgcttatgaggcggataaaatc 21347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 21185467 - 21185436
Alignment:
Q  92 ttcatgtttttctgtactctcaattattttct 123  Q
    ||||||||||||||||||||||||||||||||    
T  21185467 ttcatgtttttctgtactctcaattattttct 21185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 31183750 - 31183812
Alignment:
Q  232 atcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||| |||||||||||||| ||||||  |||||||| |||||  ||||||| ||||||||||    
T  31183750 atccttggaggatatgcgctaatgaggtggataaaatactcaataacagtgattatgtcacgc 31183812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 38676893 - 38676935
Alignment:
Q  262 ataaaatcctcaaagacagtgactatgtcacgctttaggttat 304  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcaggttat 38676935  T

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Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 112 - 294
Target Start/End: Complemental strand, 19698034 - 19697851
Alignment:
Q  112 caattattttctctcatccaagatattgaa-tttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattc 210  Q
    ||||||||||||||| ||||| |||||||  ||||| ||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  19698034 caattattttctctcttccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattc 19697935  T
Q  211 ataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  19697934 ataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgc 19697851  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 6591938 - 6591846
Alignment:
Q  211 ataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    ||||||| | |||||| ||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | ||||||    
T  6591938 ataacggagaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcaggtta 6591846  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 15517971 - 15518073
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    ||||| |||| ||||| ||| ||||||| ||||| ||||||||||||| |||| | | ||||||| |||||||||||||||| ||||| |||||||| ||    
T  15517971 aattaatttccctcattcaaaatattgagtttctgggttacatctcctcatatctttaagataaagttgagttgttctgtcacctccggttatgatttat 15518070  T
Q  213 aac 215  Q
    |||    
T  15518071 aac 15518073  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 15518074 - 15518127
Alignment:
Q  240 aggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacg 293  Q
    |||||||||||||||||||| |||| ||||||||| || |||||||||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacg 15518127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 24045001 - 24044939
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||||||||||||||||||||||||||| ||  ||||||| || |||||||||| ||||||||    
T  24045001 tatcctgggaggatatgcgcttatgaggc-gaataaatccttaaggacagtgactttgtcacgc 24044939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 24041698 - 24041626
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttat 304  Q
    |||||| |||||||||||||||||||||| ||  |||| || ||||||||||||| |||||||| ||| |||||    
T  24041698 tatcctaggaggatatgcgcttatgaggc-gaataaattcttaaagacagtgactttgtcacgccttatgttat 24041626  T

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Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 99 - 292
Target Start/End: Original strand, 11673917 - 11674110
Alignment:
Q  99 ttttctgtactctcaattattttctctcatccaagatattgaa-tttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaact 197  Q
    ||||||||||   |||| |||||||||||||||| |||||||  ||||| ||||||||||| |||||| | |||||||||||||||||||||||||| ||    
T  11673917 ttttctgtacatacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacct 11674016  T
Q  198 ccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcac 292  Q
    |||||||||||||||||| ||| | |||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  11674017 ccgattatgattcataac-gggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcac 11674110  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 31210194 - 31210081
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| || || || |||||||||||| |||||||||| |||||||||||||| |||||    
T  31210194 gagttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacag 31210095  T
Q  281 tgactatgtcacgc 294  Q
    ||||||||||||||    
T  31210094 tgactatgtcacgc 31210081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 31206745 - 31206623
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| ||||  |||||||||||||||||| |||||| || |||||||  |||||||||||||||||||  ||||||||||||||||||||    
T  31206745 gagttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacag 31206646  T
Q  281 tgactatgtcacgctttaggtta 303  Q
    |||||||||||||| | ||||||    
T  31206645 tgactatgtcacgcctcaggtta 31206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 39426579 - 39426457
Alignment:
Q  172 gataaatttgagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcct 271  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||| || |||| ||||||||||| |||||||||| | |||||||||||    
T  39426579 gataaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcct 39426480  T
Q  272 caaagacagtgactatgtcacgc 294  Q
    ||| |||||||||||| ||||||    
T  39426479 caaggacagtgactatatcacgc 39426457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 291
Target Start/End: Complemental strand, 5435047 - 5434870
Alignment:
Q  115 ttattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataa 214  Q
    ||||||||| |||||||| ||||||| ||| | |||||||||| ||||||| | |||||||||||| ||||||||||||| |||   ||||||||| |||    
T  5435047 ttattttctatcatccaaaatattgagtttatgggttacatcttctgatatttttgagataaattttagttgttctgtcatctctatttatgattcttaa 5434948  T
Q  215 cgggggagaa-ctattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtca 291  Q
    ||||| |||| || || |||||||  || ||||||||||||||||  || |||||| |||||||||  ||||||||||    
T  5434947 cggggaagaacctcttgtatcctgacagaatatgcgcttatgaggtggaaaaaatcatcaaagacaacgactatgtca 5434870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 3850671 - 3850545
Alignment:
Q  169 tgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaacta-ttatatcctgggaggatatgcgcttatgaggcagataaaa 267  Q
    |||||||||||||||||||||| ||| ||| |  ||||||||||| || || ||||||  || |||| | ||||||||||||||||||||||  ||||||    
T  3850671 tgagataaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcgtataaaa 3850572  T
Q  268 tcctcaaagacagtgactatgtcacgc 294  Q
    || |||| |||||||||||||||||||    
T  3850571 tcatcaaggacagtgactatgtcacgc 3850545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 22301220 - 22301148
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||||||    
T  22301220 tatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 22301148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 369
Target Start/End: Complemental strand, 32352495 - 32352363
Alignment:
Q  233 tcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttaccatgttgcaggtcatc 332  Q
    ||||||||||||||||||||||||||| ||  ||||||| || |||||||||| |||||||| |   |||||| |||||||||| |   |||||||||||    
T  32352495 tcctgggaggatatgcgcttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcgtgttattcaacggtttactagtgtgcaggtcatc 32352397  T
Q  333 tccgttcatgacttcttgtttgtttacttcaccatta 369  Q
      |||| ||||   |||||||||||| |||| |||||    
T  32352396 atcgttaatga---cttgtttgtttatttcaacatta 32352363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 15569565 - 15569687
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagaca 279  Q
    |||||||||||||| ||| ||| |||||||||| | | | ||||| | || ||||||||||||||||| ||||||||||| ||| ||||||  || ||||    
T  15569565 gagttgttctgtcacctctgat-atgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggaca 15569662  T
Q  280 gtgactatgtcacgctttaggttat 304  Q
    |||||| |||||||| | |||||||    
T  15569663 gtgactttgtcacgcctcaggttat 15569687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 13815787 - 13815849
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    |||||||||| |||||||||||||||||| ||  ||||||| || |||||||||| ||||||||    
T  13815787 tatcctgggaagatatgcgcttatgaggc-gaataaatccttaaggacagtgactttgtcacgc 13815849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 331
Target Start/End: Complemental strand, 2609726 - 2609571
Alignment:
Q  175 aaatttgagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatcctca 273  Q
    ||||| ||||||||||||||  || ||| |||||||||| | | | ||||| | || ||||||| ||||||||||||||||||| ||||| |||| || |    
T  2609726 aaattcgagttgttctgtcacatctgat-atgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagat-aaatactta 2609629  T
Q  274 aagacagtgactatgtcacgctttaggttattgaacggtttaccatgttgcaggtcat 331  Q
    | || |||||||  ||||||| | |||||||  || || |||| || |||||||||||    
T  2609628 aggatagtgacttcgtcacgcctcaggttatataaaggcttactattttgcaggtcat 2609571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 115 - 294
Target Start/End: Complemental strand, 6667902 - 6667725
Alignment:
Q  115 ttattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataa 214  Q
    |||||||||||||||||| ||||||||||  | |||||||||||||||||| |  |||||| ||||||| |||||||||| ||||| |||||||||||||    
T  6667902 ttattttctctcatccaatatattgaattcatgggttacatctcctgatatct--gagatatatttgagctgttctgtcacctccggttatgattcataa 6667805  T
Q  215 cgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  6667804 cggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgc 6667725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 304
Target Start/End: Complemental strand, 13010698 - 13010529
Alignment:
Q  134 atattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaactattatat 233  Q
    ||||||| ||| | |||||||||| ||||||| | ||||||| ||||||||||||||||||  |||| ||||||||| |||||| | |||||| ||||||    
T  13010698 atattgagtttttgggttacatcttctgatatctctgagatatatttgagttgttctgtcacatccg-ttatgattcgtaacggagaagaactgttatat 13010600  T
Q  234 cctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttat 304  Q
    ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||    
T  13010599 cctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttat 13010529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 294
Target Start/End: Complemental strand, 6671568 - 6671397
Alignment:
Q  115 ttattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataa 214  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||| |  |||||| ||||||| |||||||||| ||||| |||||||||||||    
T  6671568 ttattttctctcatccaagatattgaattcatgggttacatctcctgatatct--gagatatatttgagctgttctgtcacctccggttatgattcataa 6671471  T
Q  215 cgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||| |||||| || ||||||||||||||||||      ||||| |||||||||||||| ||| |||||||||||||||    
T  6671470 cggggaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaaggacggtgactatgtcacgc 6671397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 895463 - 895553
Alignment:
Q  203 tatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacg 293  Q
    |||||||||||   ||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  895463 tatgattcatattagggaagaacttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacg 895553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 44643451 - 44643572
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| ||| | |||||||||||| ||||| |||||| || |||||| |||||||||||||||||||||| |||| ||| || || |||||    
T  44643451 gagttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacag 44643549  T
Q  281 tgactatgtcacgctttaggtta 303  Q
    |||||||||||||| | ||||||    
T  44643550 tgactatgtcacgcctcaggtta 44643572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 20058172 - 20058100
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||| ||| |||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||| | ||||||    
T  20058172 tatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 20058100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 363
Target Start/End: Complemental strand, 11914126 - 11914000
Alignment:
Q  236 tgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttaccatgttgcaggtcatctcc 335  Q
    ||||||||||||| |||||||| | |||||| |||| || || | |||||  ||||||| |||||||||| ||||||| || || ||| ||||||||       
T  11914126 tgggaggatatgcacttatgagacggataaa-tccttaaggataatgacttcgtcacgccttaggttatttaacggttgactattttgtaggtcatcgat 11914028  T
Q  336 gttcatgacttcttgtttgtttacttca 363  Q
    |||||||| || ||||||||||||||||    
T  11914027 gttcatgattttttgtttgtttacttca 11914000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 316
Target Start/End: Complemental strand, 31767599 - 31767432
Alignment:
Q  148 ggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctgggaggatat 246  Q
    |||||||||||||| ||||| || |||| |||  ||||||||||||| ||| |||  ||||||||| | ||| ||||| | || |||||| |||||||||    
T  31767599 ggttacatctcctgctatgtttgtgatagattcaagttgttctgtcacctctgatg-tgattcatatcagggaagaacatgttgtatcctaggaggatat 31767501  T
Q  247 gcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttac 316  Q
    | ||||||||||| ||| ||||||| || || ||||| | |||||||| | | |||| | ||||||||||    
T  31767500 gtgcttatgaggcggat-aaatccttaaggatagtgattttgtcacgcctcatgttagttaacggtttac 31767432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 20058250 - 20058203
Alignment:
Q  112 caattattttctctcatccaagatattgaatttctaggttacatctcc 159  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||    
T  20058250 caattattttctctcatccaaattattgagtttctaggttacatctcc 20058203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 43287897 - 43287982
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttac 316  Q
    |||||||| | ||||||||||||||||||  |||||  | | || |||||||||| |||||||| | | |||||| ||||||||||    
T  43287897 tatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgactttgtcacgcctcatgttattcaacggtttac 43287982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 303
Target Start/End: Complemental strand, 24981339 - 24981159
Alignment:
Q  123 tctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggag 222  Q
    |||||||||| ||||||| |||||  ||||||||||||||||| | |||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||    
T  24981339 tctcatccaaaatattgagtttctgtgttacatctcctgatatctttgagataaatttgagttgttctatcatctccggttatgattcataacggggaag 24981240  T
Q  223 aactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    |||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||  |||||||||||||| | ||||||    
T  24981239 aactgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtta 24981159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 312
Target Start/End: Complemental strand, 12141839 - 12141640
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    |||||||||| ||||||||| ||||||| ||| | ||||| |||| ||||||| | ||| |||||||||||||||||||||| |||   |||||||||||    
T  12141839 aattattttccctcatccaaaatattgagtttttgggttatatcttctgatatctttgatataaatttgagttgttctgtcacctctagttatgattcat 12141740  T
Q  213 aacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggt 312  Q
    ||||||| | || | || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| | ||||||    
T  12141739 aacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacggt 12141640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 1953623 - 1953779
Alignment:
Q  118 ttttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgg 217  Q
    |||||||| |||||| || |||| ||||| ||||||||||||||| || | || ||||||||||||||||||||||| ||||  |||||||||||||| |    
T  1953623 ttttctcttatccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttgttctgtcacctcccgttatgattcataacag 1953722  T
Q  218 gggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaa 274  Q
    || |||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  1953723 ggaagaactgttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaa 1953779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 118 - 294
Target Start/End: Original strand, 47580330 - 47580508
Alignment:
Q  118 ttttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgg 217  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||| || | || |||||||||||||| |||||||| ||  | ||||||||||||||||    
T  47580330 ttttctctcatccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttcttctgtcatctttggttatgattcataacgg 47580429  T
Q  218 gggagaactattatatcctg--ggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    || ||| || || |||||||  ||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||    
T  47580430 ggaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgc 47580508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 4242688 - 4242576
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| || ||||||||||||||||||||| |||||  || ||||||||||||||||||||| ||||| | |||||||||||||| ||||     
T  4242688 gagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggacaa 4242589  T
Q  281 tgactatgtcacg 293  Q
     || |||||||||    
T  4242588 cgattatgtcacg 4242576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 369
Target Start/End: Original strand, 43254080 - 43254298
Alignment:
Q  147 aggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctgggaggata 245  Q
    ||||||||||||||| ||| | ||||||| |||  ||||||||||||| ||| ||| ||||||||||   ||| ||||| | || |||||||||||||||    
T  43254080 aggttacatctcctgctatctttgagatagattcaagttgttctgtcacctctgat-atgattcatatatgggaagaacatgttgtatcctgggaggata 43254178  T
Q  246 tgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttaccatgttgcaggtcatctccgttcatgact 345  Q
    |||||||||||||| ||  ||||||| || |||||||||| |||||||| | | |||||| |||||||||| |   || |||||||| ||||| ||||      
T  43254179 tgcgcttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttattcaacggtttactactgtgtaggtcatcaccgttaatga-- 43254275  T
Q  346 tcttgtttgtttacttcaccatta 369  Q
     |||||||||||| |||| |||||    
T  43254276 -cttgtttgtttatttcaacatta 43254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 51465448 - 51465562
Alignment:
Q  134 atattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaactattatat 233  Q
    ||||||| ||||| |||||||||||||||||| |  ||||||||||||||||||||||| | |||||| ||||||||||||||||  |||||| || |||    
T  51465448 atattgagtttctgggttacatctcctgatatct--gagataaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtat 51465545  T
Q  234 cctgggaggatatgcgc 250  Q
    ||||| || ||||||||    
T  51465546 cctggaagaatatgcgc 51465562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 9111620 - 9111513
Alignment:
Q  221 agaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttaccatg 320  Q
    |||||| || |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| | || ||||  ||| |||||| ||     
T  9111620 agaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcagattatataacagtttactatt 9111521  T
Q  321 ttgcaggt 328  Q
    ||||||||    
T  9111520 ttgcaggt 9111513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 38825659 - 38825492
Alignment:
Q  118 ttttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgg 217  Q
    ||||||||| ||| | |||||||||||   |||||||||| ||| ||| | |||||||||||  |||||||||| || ||  ||| |||||||||| | |    
T  38825659 ttttctctcctcctaaatattgaattttcgggttacatcttctgttatctttgagataaattcaagttgttctgccacctttgat-atgattcatagcag 38825561  T
Q  218 gggagaacta-ttatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgact 285  Q
     | ||||||  || ||||||||||||||||||| ||||||||  ||||||||||| || ||||||||||    
T  38825560 agaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaaggacagtgact 38825492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 39197184 - 39197297
Alignment:
Q  154 atctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgg-gggagaactattatatcctgggaggatatgcgctt 252  Q
    |||||||| ||| | ||||||| |||||||||||||||||| || ||| |||||||||||  || | | ||  | || |||||||| |||||||||||||    
T  39197184 atctcctgttatctttgagatatatttgagttgttctgtcaccttcgactatgattcatattggagagggacttgttgtatcctggtaggatatgcgctt 39197283  T
Q  253 atgaggcagataaa 266  Q
    ||||||||||||||    
T  39197284 atgaggcagataaa 39197297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 294
Target Start/End: Complemental strand, 38828853 - 38828693
Alignment:
Q  134 atattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataacgggggagaacta-ttata 232  Q
    ||||||||||| | |||||||||| ||  ||| | | |||||||||  |||||||||| |||||| ||| ||||||||||   ||| ||||||  || ||    
T  38828853 atattgaatttttgggttacatcttctcttatcttttagataaattcaagttgttctgccaactctgat-atgattcatagtagggaagaacttgtttta 38828755  T
Q  233 tcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    |||||||| |||||| |||||| |||| ||||||||||| || || |||||||  |||||||    
T  38828754 tcctgggaagatatgagcttataaggcggataaaatccttaaggatagtgacttcgtcacgc 38828693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 112 - 294
Target Start/End: Original strand, 82550 - 82733
Alignment:
Q  112 caattattttctctcatccaagatattgaa-tttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattc 210  Q
    |||| |||||||||||||||| |||||||  ||||| |||| |||||| |||||| | ||||||||||||||| ||||||||||  ||||  |||||||     
T  82550 caatcattttctctcatccaaaatattgaggtttctgggttgcatctcatgatatctttgagataaatttgagatgttctgtcacatccggctatgattt 82649  T
Q  211 ataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgc 294  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  82650 ataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgc 82733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 18594747 - 18594935
Alignment:
Q  115 ttattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcataa 214  Q
    ||||||| ||||||| || ||||||| ||| | |||||||||||||||||| | ||| |||||||||||||||||||||| || |  |||||||||||||    
T  18594747 ttattttttctcatctaaaatattgagtttttgggttacatctcctgatatctttgacataaatttgagttgttctgtcaccttcagttatgattcataa 18594846  T
Q  215 cgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    ||||| |||||| || ||||||| ||| ||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| | ||||||    
T  18594847 cggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcaggtta 18594935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 26703205 - 26703014
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    |||||||||||||||||||| ||||||| |||  |||||||||||| |||||| | ||||||||||||||  |||||||||| ||||| || ||||||||    
T  26703205 aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgagataaatttgaactgttctgtcacctccggttttgattcat 26703106  T
Q  213 aacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    | | | | ||||| | || |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||| | ||||||    
T  26703105 accagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtta 26703014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 26972938 - 26972747
Alignment:
Q  113 aattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattcat 212  Q
    |||||||||||||||||||| ||||||| |||  |||||||||||| |||||| | ||||||||||||||  |||||||||| ||||| || ||||||||    
T  26972938 aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgagataaatttgaactgttctgtcacctccggttttgattcat 26972839  T
Q  213 aacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggtta 303  Q
    | | | | ||||| | || |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||| | ||||||    
T  26972838 accagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtta 26972747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 39292035 - 39292208
Alignment:
Q  112 caattattttctctcatccaagatattgaatttctaggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattca 211  Q
    |||||||||||||||||| ||  ||||||  |||| |||||||||||| | ||| | |||||| | ||||||||||| ||||| |       ||||||||    
T  39292035 caattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttatgtcacc-------atgattca 39292127  T
Q  212 taacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcac 292  Q
    |||||| | |||||| || ||| |||| |||||||||||||||||||| ||||||||||| || |||||||||||| ||||    
T  39292128 taacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcac 39292208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 13292002 - 13292037
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaa 266  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13292002 tatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 127699 - 127820
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| ||| ||  |||||||||| | ||| |||||| || |||| |||||||||||||| || |||||| |||||||||||||| |||||    
T  127699 gagttgttctgtcacctctgac-atgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacag 127797  T
Q  281 tgactatgtcacgctttaggtta 303  Q
    |||||||||||||| | ||||||    
T  127798 tgactatgtcacgcctcaggtta 127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 110120 - 110232
Alignment:
Q  181 gagttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacag 280  Q
    |||||||||||||| ||| ||  |||||||||| | | | |||||| || |||| |||||||||||||| ||||||||| |||||||||||||| |||||    
T  110120 gagttgttctgtcacctctgac-atgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 110218  T
Q  281 tgactatgtcacgc 294  Q
    ||||||||||||||    
T  110219 tgactatgtcacgc 110232  T

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Target: scaffold0076 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 6877 - 6766
Alignment:
Q  182 agttgttctgtcaactccgattatgattcataacgggggagaactattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagt 281  Q
    ||||||||||||| ||| ||| |||||||||| | ||| | |||| || |||| ||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  6877 agttgttctgtcatctctgat-atgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagt 6779  T
Q  282 gactatgtcacgc 294  Q
    |||||||||||||    
T  6778 gactatgtcacgc 6766  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 331
Target Start/End: Complemental strand, 19930223 - 19930005
Alignment:
Q  112 caattattttctctcatccaagatattgaatttc-taggttacatctcctgatatgtatgagataaatttgagttgttctgtcaactccgattatgattc 210  Q
    |||||||||||||| |||||| ||||||| |||  | |||||||||||||| ||| | ||||||| |||  ||||||||| ||| ||| |||  ||||||    
T  19930223 caattattttctcttatccaaaatattgagttttgtgggttacatctcctgctatctttgagatagattcaagttgttctatcacctctgatg-tgattc 19930125  T
Q  211 ataacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaac 309  Q
    ||  | ||| ||||| | || |||| |||||||||||||||||||||||| ||| ||||||| || ||| |||||| |||||||| | | |||||  |||    
T  19930124 atctcagggaagaacatgttgtatc-tgggaggatatgcgcttatgaggcggat-aaatccttaaggacggtgactttgtcacgcctcatgttatataac 19930027  T
Q  310 ggtttaccatgttgcaggtcat 331  Q
    ||||||| || |||||||||||    
T  19930026 ggtttactattttgcaggtcat 19930005  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 11634300 - 11634196
Alignment:
Q  171 agataaatttgagttgttctgtcaactccgattatgattcataacgggggagaac-tattatatcctgggaggatatgcgcttatgaggcagataaaatc 269  Q
    |||||||||||||||||| ||| | || |  |||||||||||||||||| || || | || ||||||||||||||||||| ||| ||||  |||||||||    
T  11634300 agataaatttgagttgttgtgttacctgcagttatgattcataacggggaaggacatgttgtatcctgggaggatatgcgtttacgaggtggataaaatc 11634201  T
Q  270 ctcaa 274  Q
    |||||    
T  11634200 ctcaa 11634196  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 42253630 - 42253531
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttaccatgttgcaggtca 330  Q
    |||||| |||||||||||||||||||||| | |||| |||| || |||||||||| |||||||| | | |||||  |||||||||| || ||||||||||    
T  42253630 tatccttggaggatatgcgcttatgaggcgggtaaa-tccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgcaggtca 42253532  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 9372280 - 9372196
Alignment:
Q  231 tatcctgggaggatatgcgcttatgaggcagataaaatcctcaaagacagtgactatgtcacgctttaggttattgaacggtttac 316  Q
    |||||||||| |||||||||||||||||| ||  ||||||| || ||||||||||  |||| || | |||||||| ||||||||||    
T  9372280 tatcctgggacgatatgcgcttatgaggc-gaataaatccttaaggacagtgacttcgtcatgcctcaggttatttaacggtttac 9372196  T

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