View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_65 (Length: 388)

Name: NF1172_low_65
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_65
NF1172_low_65
[»] chr6 (12 HSPs)
chr6 (206-388)||(29914620-29914802)
chr6 (104-208)||(29915652-29915756)
chr6 (101-208)||(23936519-23936626)
chr6 (101-208)||(34439344-34439451)
chr6 (101-208)||(26669034-26669140)
chr6 (119-208)||(29927318-29927406)
chr6 (137-208)||(12828653-12828723)
chr6 (101-172)||(32258858-32258929)
chr6 (127-172)||(19689809-19689854)
chr6 (137-172)||(30627227-30627262)
chr6 (119-172)||(8052480-8052533)
chr6 (180-208)||(6992513-6992541)
[»] chr1 (28 HSPs)
chr1 (101-208)||(1430472-1430579)
chr1 (104-208)||(1428976-1429080)
chr1 (101-208)||(5317513-5317620)
chr1 (119-208)||(84472-84560)
chr1 (125-208)||(43105562-43105644)
chr1 (124-208)||(24040983-24041066)
chr1 (119-208)||(6332277-6332365)
chr1 (119-208)||(30006240-30006328)
chr1 (119-208)||(43929794-43929882)
chr1 (121-208)||(11650168-11650254)
chr1 (119-198)||(40060860-40060938)
chr1 (119-208)||(10690909-10690997)
chr1 (121-208)||(52403586-52403672)
chr1 (119-208)||(37437357-37437446)
chr1 (119-208)||(28751362-28751450)
chr1 (136-209)||(45749470-45749542)
chr1 (119-208)||(48259817-48259905)
chr1 (119-208)||(43755138-43755225)
chr1 (119-208)||(50349811-50349905)
chr1 (123-208)||(2245898-2245982)
chr1 (119-207)||(44583883-44583969)
chr1 (119-208)||(48319959-48320043)
chr1 (137-176)||(6377258-6377297)
chr1 (106-172)||(50158259-50158325)
chr1 (119-208)||(12002356-12002444)
chr1 (119-208)||(15698704-15698793)
chr1 (125-198)||(43738214-43738286)
chr1 (180-208)||(44582792-44582820)
[»] chr8 (21 HSPs)
chr8 (101-208)||(27109756-27109863)
chr8 (117-208)||(6839317-6839407)
chr8 (121-209)||(32737874-32737961)
chr8 (137-208)||(22601245-22601315)
chr8 (114-208)||(7612608-7612700)
chr8 (119-208)||(38329009-38329096)
chr8 (119-208)||(9022506-9022594)
chr8 (101-208)||(2067810-2067916)
chr8 (121-172)||(24732093-24732144)
chr8 (137-208)||(30789045-30789115)
chr8 (121-208)||(36915475-36915561)
chr8 (105-208)||(11335979-11336075)
chr8 (119-208)||(45187250-45187338)
chr8 (125-172)||(2812921-2812968)
chr8 (137-208)||(41790113-41790183)
chr8 (114-172)||(32061408-32061466)
chr8 (119-208)||(11257650-11257737)
chr8 (119-208)||(32326679-32326767)
chr8 (119-172)||(3095467-3095520)
chr8 (180-208)||(8471369-8471397)
chr8 (136-172)||(37185633-37185669)
[»] chr5 (18 HSPs)
chr5 (101-208)||(15400282-15400389)
chr5 (101-208)||(14979987-14980093)
chr5 (101-208)||(31557276-31557383)
chr5 (101-208)||(4967427-4967533)
chr5 (119-208)||(12167564-12167652)
chr5 (119-208)||(36660536-36660624)
chr5 (106-208)||(31889830-31889931)
chr5 (119-208)||(43257814-43257902)
chr5 (119-208)||(166603-166691)
chr5 (119-213)||(34919841-34919934)
chr5 (119-208)||(36783466-36783554)
chr5 (104-208)||(4011599-4011702)
chr5 (178-209)||(32963020-32963051)
chr5 (119-172)||(4371496-4371549)
chr5 (119-172)||(4751484-4751537)
chr5 (123-168)||(24436498-24436543)
chr5 (131-176)||(33741768-33741813)
chr5 (136-172)||(39059951-39059987)
[»] chr3 (29 HSPs)
chr3 (119-208)||(647546-647634)
chr3 (123-208)||(2567970-2568054)
chr3 (125-208)||(40048985-40049067)
chr3 (106-208)||(26965449-26965550)
chr3 (123-208)||(1340887-1340971)
chr3 (119-208)||(27483147-27483235)
chr3 (119-208)||(38457571-38457659)
chr3 (101-201)||(34059983-34060082)
chr3 (114-208)||(5244696-5244788)
chr3 (119-208)||(44648364-44648453)
chr3 (120-208)||(2662447-2662534)
chr3 (121-208)||(38165617-38165703)
chr3 (119-208)||(31290928-31291015)
chr3 (123-208)||(35239472-35239556)
chr3 (119-208)||(36771530-36771618)
chr3 (123-208)||(37225553-37225637)
chr3 (104-208)||(790183-790286)
chr3 (125-208)||(45095639-45095723)
chr3 (125-201)||(53716121-53716196)
chr3 (123-208)||(44854426-44854508)
chr3 (119-208)||(83406-83494)
chr3 (119-208)||(46362964-46363052)
chr3 (101-208)||(25061806-25061910)
chr3 (101-208)||(43600126-43600234)
chr3 (137-208)||(43736842-43736911)
chr3 (119-208)||(43580588-43580678)
chr3 (101-208)||(19552642-19552749)
chr3 (125-172)||(4392041-4392088)
chr3 (119-172)||(42857045-42857098)
[»] chr2 (17 HSPs)
chr2 (101-208)||(4840663-4840769)
chr2 (119-208)||(24775299-24775387)
chr2 (101-208)||(40410553-40410659)
chr2 (119-208)||(7743511-7743599)
chr2 (123-208)||(34225860-34225944)
chr2 (123-208)||(1298738-1298822)
chr2 (119-208)||(40987236-40987324)
chr2 (140-208)||(1381849-1381916)
chr2 (119-208)||(37106972-37107062)
chr2 (101-208)||(4766153-4766254)
chr2 (137-208)||(36360347-36360417)
chr2 (119-208)||(14378202-14378290)
chr2 (101-208)||(43460883-43460986)
chr2 (119-172)||(44228611-44228664)
chr2 (120-208)||(11171853-11171940)
chr2 (122-201)||(29795156-29795234)
chr2 (137-175)||(6592098-6592136)
[»] chr4 (30 HSPs)
chr4 (122-208)||(34360112-34360197)
chr4 (114-208)||(43421076-43421169)
chr4 (117-209)||(32140941-32141032)
chr4 (101-208)||(34096123-34096229)
chr4 (101-208)||(56422938-56423044)
chr4 (103-208)||(52732698-52732802)
chr4 (117-208)||(51737277-51737365)
chr4 (124-208)||(39671068-39671151)
chr4 (137-208)||(37445767-37445837)
chr4 (101-208)||(44855351-44855457)
chr4 (125-208)||(51930683-51930765)
chr4 (119-208)||(21045240-21045328)
chr4 (119-208)||(36805407-36805495)
chr4 (123-208)||(45520419-45520503)
chr4 (119-208)||(54512130-54512218)
chr4 (137-208)||(15501129-15501199)
chr4 (119-208)||(42672496-42672584)
chr4 (125-208)||(19849191-19849273)
chr4 (101-196)||(31817138-31817232)
chr4 (114-196)||(3093467-3093548)
chr4 (119-207)||(56556236-56556320)
chr4 (119-172)||(29840197-29840250)
chr4 (124-208)||(38761788-38761871)
chr4 (101-192)||(50072374-50072467)
chr4 (126-208)||(29289852-29289936)
chr4 (153-208)||(35928596-35928650)
chr4 (119-169)||(30492865-30492915)
chr4 (123-172)||(45903377-45903426)
chr4 (180-208)||(17499732-17499760)
chr4 (180-208)||(54233925-54233953)
[»] chr7 (22 HSPs)
chr7 (119-208)||(34002086-34002175)
chr7 (112-208)||(18886756-18886851)
chr7 (119-208)||(3680877-3680965)
chr7 (119-208)||(17869348-17869436)
chr7 (104-208)||(36447550-36447653)
chr7 (104-208)||(41905874-41905977)
chr7 (127-208)||(34733420-34733500)
chr7 (125-208)||(28044101-28044183)
chr7 (137-208)||(42259521-42259591)
chr7 (123-196)||(26527356-26527428)
chr7 (136-175)||(30833066-30833105)
chr7 (123-208)||(33056242-33056327)
chr7 (154-208)||(40207379-40207432)
chr7 (119-208)||(32275306-32275394)
chr7 (126-202)||(32873127-32873203)
chr7 (124-208)||(22627313-22627396)
chr7 (119-172)||(40298984-40299037)
chr7 (143-208)||(42010553-42010617)
chr7 (119-208)||(42121653-42121741)
chr7 (180-208)||(6521930-6521958)
chr7 (180-208)||(10684843-10684871)
chr7 (180-208)||(26963592-26963620)
[»] scaffold0072 (1 HSPs)
scaffold0072 (123-208)||(12040-12123)
[»] scaffold0119 (1 HSPs)
scaffold0119 (101-208)||(1653-1759)
[»] scaffold0580 (2 HSPs)
scaffold0580 (101-202)||(1690-1790)
scaffold0580 (101-202)||(9429-9529)
[»] scaffold0238 (1 HSPs)
scaffold0238 (119-208)||(15994-16081)
[»] scaffold0189 (1 HSPs)
scaffold0189 (119-172)||(13022-13075)
[»] scaffold0194 (1 HSPs)
scaffold0194 (101-172)||(8294-8365)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 206 - 388
Target Start/End: Complemental strand, 29914802 - 29914620
Alignment:
Q  206 aaataatagctacatttcaattaatggacacctttgcttctacatctacagtcaacgagctctccctaaaaccaggaaacaaagttcttaaagttgaaaa 305  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  29914802 aaataatagctatatttcaattaatggacacctttgcttctacatctacagttaacgagctctccctgaaaccaggaaacaaagttcttaaagttgaaaa 29914703  T
Q  306 tgacctttatctgtctaatatatctaaagatcggttccttttataataaaaaatacaggttaacaaaaagacttctcaaagat 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29914702 tgacctttatctgtctaatatatctaaagatcggttccttttataataaaaaatacaggttaacaaaaagacttctcaaagat 29914620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 29915756 - 29915652
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||||||    
T  29915756 gttttaggtgttggcacacatattaagaaattgaatgaaataataattagaaataacacttttactaaactgccatttactttataagaaaaagacaaac 29915657  T
Q  204 ttaaa 208  Q
     ||||    
T  29915656 ataaa 29915652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 23936519 - 23936626
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| |||    
T  23936519 gtcgttttaggtgttgggacacatattaagaaatggaatgaaataatcattagatataacatttttactgaattgccctttactttataagaaaaaaaca 23936618  T
Q  201 aacttaaa 208  Q
    || |||||    
T  23936619 aatttaaa 23936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34439344 - 34439451
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| ||||  ||| | ||||||||||  ||||||||||| ||||||||||||| ||||| |||||||| ||||| |||||||||||||||||    
T  34439344 gtcgttttaggtgttgacacataaattaagaaatgaaatgaaataatcattagatataacatttttattaaattgccctttattttataagaaaaagaca 34439443  T
Q  201 aacttaaa 208  Q
    ||| ||||    
T  34439444 aacataaa 34439451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 26669034 - 26669140
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| || | ||| ||||||||||||  ||||||||||| ||| ||||||||  |||||||||||||| | |||||||||||||||||||||    
T  26669034 gtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatataacgtttttactaaattgc-ccttactttataagaaaaagaca 26669132  T
Q  201 aacttaaa 208  Q
    || |||||    
T  26669133 aaattaaa 26669140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 29927406 - 29927318
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||| |||||||||||| |||||| ||||||||||||||||  |   | |||||||||||||||||||||||||||||    
T  29927406 acacagattaaaaaatagaatgaaataatcattagacataacacttttactaacat-atccttactttataagaaaaagacaaacttaaa 29927318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 12828653 - 12828723
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||||||||||||| ||||||    
T  12828653 aatgaaataatcattagacataacacttttactaaactgc-ccttactttataagaaaaagacaagcttaaa 12828723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 32258929 - 32258858
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||| ||||||| |||  |||||||||||||||| || ||||||||| ||| |||||||| |||||||||||    
T  32258929 gtcgctttaggctttgacacacagattaagaaatcgattgaaataatcattggatataacgcttttactaaa 32258858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 19689809 - 19689854
Alignment:
Q  127 taagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  19689809 taagaaatggaatgaaataattattagatataacaattttactaaa 19689854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 30627262 - 30627227
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaa 172  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30627262 aatgaaataatcattagatataacacttttactaaa 30627227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 8052533 - 8052480
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| ||||||||||  ||||||||||| |||||| |||||||||||| ||||    
T  8052533 acacaaattaagaaatgaaatgaaataatcattagacataacacttttattaaa 8052480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 6992541 - 6992513
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  6992541 ttactttataagaaaaagacaaacttaaa 6992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 1430472 - 1430579
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1430472 gtcgttttaggtgttggcacacagattaagaaatttaatgaaataataattagatataacacttttactaaactgcactttactttataagaaaaagaca 1430571  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  1430572 aacttaaa 1430579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 1429080 - 1428976
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    |||||||| ||||  ||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  1429080 gttttaggtgttgacacatatattaagaaattgaatgaaataattattagatataacacttttactaaactgccctttactttataagaaaaggacaaac 1428981  T
Q  204 ttaaa 208  Q
    |||||    
T  1428980 ttaaa 1428976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 5317513 - 5317620
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||||  | ||||| |||||||| |||  ||||||||||| |||||| ||||||||||||||||||||| | ||| |||||||||||||||||    
T  5317513 gtcgttttaggcaatagtacatagattaaggaatgaaatgaaataatcattagacataacacttttactaaattgccccttattttataagaaaaagaca 5317612  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  5317613 aacttaaa 5317620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 84472 - 84560
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||  | |||||||||||||||||||||||||||||    
T  84472 acacagattaaggaattgaatgaaataatcattagacataacacttttactaaaatg-tccttactttataagaaaaagacaaacttaaa 84560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 43105562 - 43105644
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||||||    
T  43105562 attaagaaattgaatgaaataatcattagacataacacttttactaaattac-cattattttataagaaaaagacaaacttaaa 43105644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 24040983 - 24041066
Alignment:
Q  124 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  24040983 gattaaggaatggaatgaaataatcattagacataacacttttactaaactgc-ccttactttataagaaaaagacaaacttaaa 24041066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 6332365 - 6332277
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||  |||||| ||||||||||||| ||||    
T  6332365 acacaaattaagaaattgaatgaaataatcattagacataacacttttactaaactgc-ctttgttttatatgaaaaagacaaacataaa 6332277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 30006328 - 30006240
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||  |||||||||||||||| |||||| |||||||| |||||||||||| | ||||||||||||||||||| ||| |||||    
T  30006328 acacagattaatgaattgaatgaaataatcattagacataacactattactaaattgctc-ttactttataagaaaaagataaatttaaa 30006240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 43929882 - 43929794
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||| | | | | |||||||||||||||||||| ||||||||    
T  43929882 acacaaattaagaaattgaatgaaataatcattagacataacacttttactatacttc-cattactttataagaaaaagactaacttaaa 43929794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 11650254 - 11650168
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||||||||||||||||  ||||||||||  | |||||||||| ||| | |||||||| ||||||||||||||||||||    
T  11650254 acagattaagaaattgaatgaaataaccattagatatagtatttttactaaactgc-ccttactttaaaagaaaaagacaaacttaaa 11650168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 40060860 - 40060938
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaaga 198  Q
    ||||| ||||||||||  ||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  40060860 acacatattaagaaatgaaatgaaataatgattagacataacacttttactaaattgc-ccttactttataagaaaaaga 40060938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 10690909 - 10690997
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||  ||||||||||| ||||||||||||| |||||||||| ||| | ||||||  |||||||||||||||||||||    
T  10690909 acacatattaagaaatgaaatgaaataatcattagatataacatttttactaaactgcac-ttacttcgtaagaaaaagacaaacttaaa 10690997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 52403672 - 52403586
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||| |||||||||||| ||| ||||||||||| ||| |||| ||| | |||||||||||| |||||||||| |||||    
T  52403672 acagattaagaaatggaatgaaataatcattggatataacactgttattaaactgc-ccttactttataaggaaaagacaaaattaaa 52403586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 37437357 - 37437446
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacactttt-actaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||||||||| | |||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  37437357 acacatattaaggaatgaaatgaaatattcattagacataacactttttactaaattgccctt-actttataagaaaaagacaaacttaaa 37437446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 28751362 - 28751450
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||| ||||||| |||||| |||||| |||||||||| ||| | |||||||||||||||| ||||||||||||    
T  28751362 acacagattaaggaatgaaataaaataatcattagacataacatttttactaaactgc-ccttactttataagaaaaggacaaacttaaa 28751450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 45749470 - 45749542
Alignment:
Q  136 gaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaat 209  Q
    |||| ||||||| |||||| |||||||||||||||||  || ||| ||||||||||||||||||||||||||||    
T  45749470 gaataaaataatcattagacataacacttttactaaaccgccctt-actttataagaaaaagacaaacttaaat 45749542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 48259817 - 48259905
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| ||| ||||||||||||  ||||| |||||||||||| |||| ||| | || |||||||||||||||| |||||||||    
T  48259817 acacagattaaggaatagaatgaaataatcgttagacataacacttttattaaactgc-ccttgctttataagaaaaagataaacttaaa 48259905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 43755225 - 43755138
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||   ||| ||||||||||||||||| | | |||||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  43755225 acacagattacagaatggaatgaaataataattaaaaa-aacacttttactaaatcgccctt-acttaataagaaaaagacaaacttaaa 43755138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 50349811 - 50349905
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttact------ttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||| ||| | |||||      ||||||||||||||||||||||||    
T  50349811 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaaactgc-ccttactttataattataagaaaaagacaaacttaaa 50349905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 2245982 - 2245898
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| ||||||| |||| |||| | |||| | |||||||||| ||  | || ||||||||||||||||||||||||||    
T  2245982 agattaagaaatggaatgaagtaatcattaaacataatatttttactaaactgt-cattcctttataagaaaaagacaaacttaaa 2245898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 44583969 - 44583883
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaa 207  Q
    ||||| ||||||||||  ||| ||||||| |||||| |||||| |||| ||||| |||   ||| ||||||||||||||||||||||||    
T  44583969 acacaaattaagaaatgaaataaaataatcattagacataacaattttcctaaactgcc--ttattttataagaaaaagacaaacttaa 44583883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 48319959 - 48320043
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||||||| |||||||    | |||||| |||| |||||||||||||||| ||| ||||||||| | |||||||||||||||    
T  48319959 acacatattaagaaatggaatgaa----tcattagacataagacttttactaaattgccctt-actttataaaagaaagacaaacttaaa 48320043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 6377258 - 6377297
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgc 176  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  6377258 aatgaaataatcattagacataacacttttactaaattgc 6377297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 50158259 - 50158325
Alignment:
Q  106 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||||| |||  ||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  50158259 tttaggctttgacacatagattaagaaatataatgcaataatcattggatataacacttttactaaa 50158325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 12002444 - 12002356
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||||||||||| || ||| |||| |||||||||||| ||| | ||  |||||| ||||||||||||||||||    
T  12002444 acacatattaaggaatgaaatgaaataatcatcagacataatacttttactaaactgc-ccttgttttatatgaaaaagacaaacttaaa 12002356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 15698704 - 15698793
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||| ||||||| |||||| |||||||||| | |||| | |  | |||||||||||||||||| |||||||||    
T  15698704 acacaaattaaggaataaaattaaataatcattagacataacactttaaataaactaccatgtactttataagaaaaagataaacttaaa 15698793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 43738214 - 43738286
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaaga 198  Q
    ||||||||||  ||| ||||||| |||||| |||| | |||||||||| | | |||||||||||||||||||||    
T  43738214 attaagaaatgaaataaaataattattagacataatatttttactaaactac-ctttactttataagaaaaaga 43738286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 44582792 - 44582820
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  44582792 ttactttataagaaaaagacaaacttaaa 44582820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 27109756 - 27109863
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  27109756 gtcgttttaggtgttggcacacatattaagaaatagaatgaaataatcattagatataacacttttactaaattgtcttttactttataagaaaaggaca 27109855  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  27109856 aacttaaa 27109863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 6839407 - 6839317
Alignment:
Q  117 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6839407 gtacacagattaaaaaatggaatgaaataatcattagacataacacttttactaaattgc-ctttactttataagaaaaagacaaacataaa 6839317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 32737961 - 32737874
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaat 209  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||||||    
T  32737961 acagattaagaaattgaatgaaata-tcattagatataacacttttgttaaactgccctttactttataagaaaaagaaaaacttaaat 32737874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 22601315 - 22601245
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  22601315 aatgaaataatcattagacataactcttttactaaattgt-ctttactttataagaaaaagacaaacttaaa 22601245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 7612700 - 7612608
Alignment:
Q  114 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||||| | ||||||||| ||| | ||||||||||||||||||||||| |||||    
T  7612700 ttggcacacagattaagaaatagaatgaaataatcattggatataacgc-tttactaaactgc-ccttactttataagaaaaagacaaaattaaa 7612608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 38329009 - 38329096
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| ||| |||||||||||| |||||| ||||||||||||||||| |  || |||||||||||  ||||||||||||||||    
T  38329009 acacagattaaggaatggaatgaaataatcattagacataacacttttactaaact--gccttactttataatcaaaagacaaacttaaa 38329096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 9022594 - 9022506
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||| ||||||| |||| |||||| ||||||||||||||||| ||| | ||  |||||| ||||||||||||||||||    
T  9022594 acacagattaaaaaatggaatgaattaatcattagacataacacttttactaaactgcac-ttgttttatatgaaaaagacaaacttaaa 9022506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 2067916 - 2067810
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| |||  ||| |||||||||||| |||||||||||| ||| |||||||| |||||| |||| ||| | |||||||||||| |||||||     
T  2067916 gtcgctttaggctttgacacatagattaagaaatggaatgaaataatcatttgatataacgcttttattaaactgc-ccttactttataaggaaaagacc 2067818  T
Q  201 aacttaaa 208  Q
    || |||||    
T  2067817 aaattaaa 2067810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 24732144 - 24732093
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  24732144 acagattaagaaattgaatgaaatagtcattggatataacacttttactaaa 24732093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 30789115 - 30789045
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| |||||||||||| |||||||  | ||||||||||||||||||||||| |||||    
T  30789115 aatgaaataatcattagacataacacttttattaaattg-tccttactttataagaaaaagacaaatttaaa 30789045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 36915561 - 36915475
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||| ||| |||||||||||| |||||| |||| | |||||||||||||| | ||  |||||| ||||||||||||||||||    
T  36915561 acagattaaggaatggaatgaaataatcattagacataatatttttactaaattgc-ccttgttttatatgaaaaagacaaacttaaa 36915475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 11335979 - 11336075
Alignment:
Q  105 ttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaact 204  Q
    |||||||| |||  ||||||||||||||||  |||||| |||  ||| ||||||||||||||||||||       ||||||||||||||||||||||| |    
T  11335979 ttttaggctttgacacacagattaagaaatgtaatgaagtaaccattcgatataacacttttactaaa-------ttactttataagaaaaagacaaaat 11336071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 45187250 - 45187338
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| || |||||||||||||| ||  | ||  |||||||||||||||||||||||||    
T  45187250 acacagattaaggaatataatgaaataatcattagacatgacacttttactaaactg-tccttgttttataagaaaaagacaaacttaaa 45187338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 2812968 - 2812921
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||    
T  2812968 attaagtaattgaatgaaataatcattagacataacacttttactaaa 2812921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 41790113 - 41790183
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| |||| ||||||| |||||||  |||| |||||||||||||||||||| |||||    
T  41790113 aatgaaataatcattagacataatacttttattaaattg-tctttgctttataagaaaaagacaaatttaaa 41790183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 32061408 - 32061466
Alignment:
Q  114 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||| ||||| |||||||||||||| |||||||| || ||| |||||||||||||||||    
T  32061408 ttggcacacatattaagaaattgaacgaaataatcatcagacataacacttttactaaa 32061466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 11257737 - 11257650
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||||||| |||||||||||| |||| | | |||| |||||||||| | | ||||| ||||||||||| |||||||||||||    
T  11257737 acacaaattaagaaatggaatgaaataattattaaaaa-aacatttttactaaactac-ctttattttataagaaacagacaaacttaaa 11257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 32326679 - 32326767
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| ||||||  |||||||||||||||| ||| | ||  |||||| |||||||||||| |||||    
T  32326679 acacagattaaggaatgaaatgaaataatcattagacgtaacacttttactaaactgc-ccttgttttatatgaaaaagacaaatttaaa 32326767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 3095467 - 3095520
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| ||||| |||| |||||||||||| |||| |||| ||||||||||||||    
T  3095467 acacaaattaaaaaatagaatgaaataatcattaaatatgacacttttactaaa 3095520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 8471397 - 8471369
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  8471397 ttactttataagaaaaagacaaacttaaa 8471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 37185633 - 37185669
Alignment:
Q  136 gaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||||||| |||||| |||||||||||||||||    
T  37185633 gaatgaaataatcattagacataacacttttactaaa 37185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 15400389 - 15400282
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||  |    
T  15400389 gtcgttttaggtgttggcacacagattaaaaaattgaatgaaataattattagatataacacttttactaaaattccctttactttataagaaaaaggaa 15400290  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  15400289 aacttaaa 15400282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 14979987 - 14980093
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| ||| ||| | |||||||||||||||||||||    
T  14979987 gtcgctttaggctttggcacacagattaagaaatggaatgaaataatcattggatataacacttttaccaaactgc-ccttactttataagaaaaagaca 14980085  T
Q  201 aacttaaa 208  Q
    || |||||    
T  14980086 aaattaaa 14980093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 31557276 - 31557383
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||| |||| |||||| |||||||||| |||||||||||| |||| |||||| ||||||| ||||   | |||||||||||||||||||||||    
T  31557276 gtcgttttaggtgttgatacacatattaagaaatagaatgaaataatcattaaatataatacttttagtaaacaaccctttactttataagaaaaagaca 31557375  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  31557376 aacttaaa 31557383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 4967427 - 4967533
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||| | ||||||||||| |||||||||    
T  4967427 gtcgctttaggctttgacacacagattaagaaatggaatgaaataatcattggatataacgcttttactaaactgc-ccttactttataaaaaaaagaca 4967525  T
Q  201 aacttaaa 208  Q
    || |||||    
T  4967526 aaattaaa 4967533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 12167564 - 12167652
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||| | |||||||||||||||| | ||||||||||    
T  12167564 acacaaattaagaaattgaatgaaataatcattagacaaaacacttttactaaactgc-ccttactttataagaaaaggtcaaacttaaa 12167652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 36660624 - 36660536
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||  | |||||||||||||||||||||||||||||    
T  36660624 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaaatg-tccttactttataagaaaaagacaaacttaaa 36660536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 31889931 - 31889830
Alignment:
Q  106 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaactt 205  Q
    ||||||| |||  |||||||||||||||| |||||||||||| |||  |||||||  ||| |||||| ||| | ||||||||||||||||||||||| ||    
T  31889931 tttaggctttgacacacagattaagaaatggaatgaaataattattgaatataacgttttcactaaactgc-ccttactttataagaaaaagacaaaatt 31889833  T
Q  206 aaa 208  Q
    |||    
T  31889832 aaa 31889830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 43257814 - 43257902
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||  |||  ||||||||||| |||||| ||||||||| ||||||| ||| | ||||||||||||||| |||||||||||||    
T  43257814 acacagattaaagaatgaaatgaaataatcattagacataacacttatactaaactgc-ccttactttataagaaatagacaaacttaaa 43257902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 166603 - 166691
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctt-tactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||| ||| ||  ||||| ||||||||||||||||||    
T  166603 acacagattaaggaatgaaatgaaataatcattagaaataacacttttactaaactgcccttgta--ttatatgaaaaagacaaacttaaa 166691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 34919934 - 34919841
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaataata 213  Q
    |||||||||||| |||  ||| ||||||| ||| || ||| || |||||||||| ||| ||| |||||||||||||||||||||||||| |||||    
T  34919934 acacagattaaggaatgaaataaaataatcattggacatagcaattttactaaactgccctt-actttataagaaaaagacaaacttaattaata 34919841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 36783554 - 36783466
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||| ||  ||||||||||| |||||| |||||| |||||||||||||| | ||||||  || |||||||||||| |||||    
T  36783554 acacagattaagagatgaaatgaaataatcattagacataacatttttactaaattgc-ccttacttgttatgaaaaagacaaatttaaa 36783466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 4011599 - 4011702
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    ||||||||| |||  ||| |||||||||||| |||| ||||||| ||| ||||||||  |||| ||||| ||| | ||| ||||||||||||||| |||     
T  4011599 gttttaggctttgacacatagattaagaaatggaatcaaataatcattggatataacgttttttctaaaatgc-ccttattttataagaaaaagataaaa 4011697  T
Q  204 ttaaa 208  Q
    |||||    
T  4011698 ttaaa 4011702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 32963020 - 32963051
Alignment:
Q  178 ctttactttataagaaaaagacaaacttaaat 209  Q
    ||||||||||||||||||||||||||||||||    
T  32963020 ctttactttataagaaaaagacaaacttaaat 32963051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 4371549 - 4371496
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| |||||| ||| |||||||||||| |||||| ||| |||||||||||||    
T  4371549 acacaaattaaggaatggaatgaaataatcattagacatagcacttttactaaa 4371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 4751484 - 4751537
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| |||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  4751484 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaaa 4751537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 24436498 - 24436543
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttac 168  Q
    |||||||| |||  ||||||||||| ||||||||||||||||||||    
T  24436498 agattaaggaataaaatgaaataatcattagatataacacttttac 24436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 33741813 - 33741768
Alignment:
Q  131 aaattgaatgaaataataattagatataacacttttactaaattgc 176  Q
    |||| |||||||||||| |||||||||| || ||||||||||||||    
T  33741813 aaatggaatgaaataatcattagatataccatttttactaaattgc 33741768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 39059987 - 39059951
Alignment:
Q  136 gaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||||||| |||||| |||||||||||||||||    
T  39059987 gaatgaaataatcattagacataacacttttactaaa 39059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 647546 - 647634
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||||||  ||||||||||| ||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||    
T  647546 acacagattaagaaatgaaatgaaataatcattagatataacagttttactaaactgc-ccttactttataagaaaaagacaaacttaaa 647634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 2567970 - 2568054
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||| |||||||||||||||| |||||||||||||||||||| ||| ||  | |||||||||||||||||||||||||||||    
T  2567970 agattaaggaattgaatgaaataatcattagatataacacttttacaaaaatg-tccttactttataagaaaaagacaaacttaaa 2568054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 40049067 - 40048985
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||| ||| |||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  40049067 attaaggaatggaatgaaataatcattagacataacacttttattaaattgc-ctttactttataagaaaaagacaaatttaaa 40048985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 26965449 - 26965550
Alignment:
Q  106 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaactt 205  Q
    ||||||| |||  ||||||||||||||||  ||||||||||| ||| |||||||| ||||||||||| ||| | ||||||||||||||||||||||| ||    
T  26965449 tttaggctttgacacacagattaagaaataaaatgaaataatcattggatataacgcttttactaaactgc-ccttactttataagaaaaagacaaaatt 26965547  T
Q  206 aaa 208  Q
    |||    
T  26965548 aaa 26965550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 1340887 - 1340971
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||  ||| ||||||||||||||||||| ||||||||||| ||||| ||  |||||||||||||||||||||||||||||||    
T  1340887 agattaaagaatggaatgaaataataattagacataacactttttctaaagtgt-ctttactttataagaaaaagacaaacttaaa 1340971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 27483147 - 27483235
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  27483147 acacaaattaaggaatgaaatgaaataatcattagacataacacttttactaaatttc-ccttactttataagaaaaagacaaacttaaa 27483235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 38457659 - 38457571
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||||||||||||| ||| | ||||||||| ||||||||| |||||||||    
T  38457659 acacaaattaagaaattgaatgaaataatcattacacataacacttttactaaactgc-cattactttattagaaaaagataaacttaaa 38457571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 34060082 - 34059983
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||||||| |||||||   |||||||||| | | | |||||||||||||||||||||    
T  34060082 gtcgctttaggctttggcacacagattaagaaatggaatgaaataataattggatataaagtttttactaaactac-ccttactttataagaaaaagaca 34059984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 5244788 - 5244696
Alignment:
Q  114 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| | | |||||| |||||||||||| |||||||||||    
T  5244788 ttggcacacatattaagaaattgaatgaaataatcattagacataacacttttattaaagt-ctctttac-ttataagaaaaaaacaaacttaaa 5244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 44648364 - 44648453
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataag-aaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| || |||||||||||||||||    
T  44648364 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactgc-ctttactttatgagaaaaaagacaaacttaaa 44648453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 2662447 - 2662534
Alignment:
Q  120 cacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||  |||  ||||||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||||||||| |||||    
T  2662447 cacagattaaagaatcaaatgaaataatcattagacataacacttttactaaattgc-ccttattttataagaaaaagacaaatttaaa 2662534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 38165617 - 38165703
Alignment:
Q  121 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||| |||  ||||||||||| |||| | ||||||||||||||||| ||  ||| |||||||||||||||||||||||||||    
T  38165617 acagattaaggaatgtaatgaaataatcattaaacataacacttttactaaactgtcctt-actttataagaaaaagacaaacttaaa 38165703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 31290928 - 31291015
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||| ||||| ||||| ||||||||| |||||||||    
T  31290928 acacagattaaggaatgaaatgaaataattattagacataacacttttactaaactgc-ctttattttattagaaaaaga-aaacttaaa 31291015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 35239556 - 35239472
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||| ||||||||| ||||||| |||||  |||||| |||||||||| ||  ||| |||||||||||||||||||||||||||    
T  35239556 agattaaaaaattgaataaaataatcattaggcataacatttttactaaactgtcctt-actttataagaaaaagacaaacttaaa 35239472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 36771530 - 36771618
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||  ||||||||||| |||||| |||| | |||||||||| ||| | ||| |||||||||||||||||||||||||    
T  36771530 acacatattaagaaatataatgaaataattattagacataatatttttactaaactgctc-ttattttataagaaaaagacaaacttaaa 36771618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 37225553 - 37225637
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||  ||||||||||| ||| ||||||| |||||||||||| ||  | ||||||||||||||||||||||| |||||    
T  37225553 agattaagaaatacaatgaaataatcattggatataatacttttactaaactg-tccttactttataagaaaaagacaaaattaaa 37225637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 790286 - 790183
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    ||||||||| |||  ||||| ||||||||||  ||||||||||| |||  ||||||| ||||||||||| ||| | |||||||||||||||||| ||||     
T  790286 gttttaggctttgacacacatattaagaaatgtaatgaaataatcattgaatataacgcttttactaaactgc-ccttactttataagaaaaagtcaaaa 790188  T
Q  204 ttaaa 208  Q
    |||||    
T  790187 ttaaa 790183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 45095723 - 45095639
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacac-ttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||| ||| |||||||||||| |||| | ||||||| |||||||||| ||| | |||||||||||||||| ||||||||||||    
T  45095723 attaaggaatggaatgaaataatcattaaacataacacattttactaaaatgccccttactttataagaaaaggacaaacttaaa 45095639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 53716196 - 53716121
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaa 201  Q
    ||||||||||  ||||||||||| ||| |||||||| ||||||||||| ||| | ||||||||||||||||||||||    
T  53716196 attaagaaatgaaatgaaataatcattggatataacgcttttactaaactgctc-ttactttataagaaaaagacaa 53716121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 44854508 - 44854426
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||  |||||||||||||||| |||||| |  |||||||||||||| ||| ||| ||||||||||||||| |||||||||||    
T  44854508 agattaatgaattgaatgaaataatcattagaca--acacttttactaaactgccctt-actttataagaaaaatacaaacttaaa 44854426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 83494 - 83406
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  |||||| |||| |||||| | ||||||||||||||| | | ||| |||||||||||||||||||||||||||    
T  83494 acacaaattaaggaatgaaatgaattaatcattagacacaacacttttactaaactaccctt-actttataagaaaaagacaaacttaaa 83406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 46362964 - 46363052
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||||||||||||||| ||||||  ||||| |||||||||| ||  | ||||||||||||||||| ||||| |||||    
T  46362964 acacatattaaggaattgaatgaaataatcattagacctaacatttttactaaactg-tccttactttataagaaaaatacaaatttaaa 46363052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 25061910 - 25061806
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||||||||| || | | ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||| | | | ||||||||||||||||  |||    
T  25061910 gtcgttttagccgattgcacacatattaaggaatgaaatgaaataatcattagacataacacttttactaaactac-ccttactttataagaaaa--aca 25061814  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  25061813 aacttaaa 25061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 43600126 - 43600234
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaa-gac 199  Q
    ||||||||||| ||||| ||  | | ||||||||  ||| ||||||| ||||||||||||| |||||||||| | | ||||||||||||| ||||| |||    
T  43600126 gtcgttttaggtgttggcacgtataataagaaatgaaataaaataattattagatataacatttttactaaacttccctttactttataaaaaaaatgac 43600225  T
Q  200 aaacttaaa 208  Q
    ||| |||||    
T  43600226 aaatttaaa 43600234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 43736842 - 43736911
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||||||||||||||||||||| | | | ||| ||||||||||||||| |||||||||    
T  43736842 aatgaaataatcattagatataacacttttactaaactactc-ttattttataagaaaaaga-aaacttaaa 43736911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 43580678 - 43580588
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctt-tactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| ||| |||||||||||| |||| |||||||| |||||||||| ||| ||| |  | |||| |||||||||||| |||||    
T  43580678 acacagattaaggaatagaatgaaataatcattacatataacatttttactaaactgcccttgttttatatatgaaaaagacaaatttaaa 43580588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 19552749 - 19552642
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataac-acttttactaaattgcgctttactttataagaaaaagac 199  Q
    |||||||||| | |||| ||||| ||||||||||  ||||||||||| ||| ||||||||   |||||||||| ||  | ||||||||||||||||| ||    
T  19552749 gtcgttttagactttggcacacaaattaagaaatgaaatgaaataatcattggatataacgttttttactaaactg-tccttactttataagaaaaatac 19552651  T
Q  200 aaacttaaa 208  Q
    ||| |||||    
T  19552650 aaaattaaa 19552642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 4392088 - 4392041
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||    
T  4392088 attaagaaatgaaatgaaataattattagacataacacttttactaaa 4392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 42857045 - 42857098
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||||||| |||  ||||||||||| |||||| |||||| ||||||||||    
T  42857045 acacagattaaggaatcaaatgaaataatcattagacataacatttttactaaa 42857098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 4840663 - 4840769
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||||||||  |||||||||| ||| | |||||||||||||||||||||    
T  4840663 gtcgttttaggctttggcacacatattaagaaatggaatgaaataatcattggatataacgtttttactaaactgc-ccttactttataagaaaaagaca 4840761  T
Q  201 aacttaaa 208  Q
    || |||||    
T  4840762 aaattaaa 4840769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 24775387 - 24775299
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||    
T  24775387 acacaaattaaggtattgaatgaaataatcattagatataacacttttactaaaatgctc-ttactttataagaaaaaaacaaacttaaa 24775299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 40410659 - 40410553
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| |||||||||||  |||||||||||||||| |||||| ||||| ||| |||||||| |||||| |||| ||| | |||||||||||||||||||||    
T  40410659 gtcgctttaggcgttgtcacacagattaagaaatggaatgacataatcattggatataacgcttttattaaactgc-ccttactttataagaaaaagaca 40410561  T
Q  201 aacttaaa 208  Q
    || |||||    
T  40410560 aaattaaa 40410553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 7743599 - 7743511
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||  |||| ||||||||||| || |||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||    
T  7743599 acacagattaaagaattaaatgaaataatcatcagatataacacttttactaagttgc-ccttactttataagaaaaagacaaatttaaa 7743511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 34225944 - 34225860
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||| |||  ||||||||||| |||||| |||| | |||||||||||||| ||| |||||||||||||||||||||||||||    
T  34225944 agattaaggaatgaaatgaaataatcattagacataataattttactaaattgccctt-actttataagaaaaagacaaacttaaa 34225860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 1298738 - 1298822
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||  ||||||||||| |||  |||||||  |||||||||||||| | ||||||||||||||||||||||| |||||    
T  1298738 agattaagaaataaaatgaaataatcattgaatataacgtttttactaaattgc-ccttactttataagaaaaagacaaaattaaa 1298822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 40987236 - 40987324
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||||||  | ||||||||||||||||||| ||| |||||    
T  40987236 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaaattg-tccttactttataagaaaaagataaatttaaa 40987324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 1381916 - 1381849
Alignment:
Q  140 gaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||| |||||| ||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  1381916 gaaataatcattagacataacacttttactaaactgctctt-actttataagaaaaagaaaaacttaaa 1381849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 37107062 - 37106972
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataag--aaaaagacaaacttaaa 208  Q
    ||||| |||||||||| |||||||||||| ||| || | ||||||||||||||||||| | ||||||||||||  ||||||| |||||||||    
T  37107062 acacacattaagaaatggaatgaaataattatttgacacaacacttttactaaattgc-ccttactttataagcaaaaaagaaaaacttaaa 37106972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 4766153 - 4766254
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||| | |||||||||||||||||||||     |||||||| ||| ||||||||  | |||||||| ||| |||||||||||||||||||||||    
T  4766153 gtcgctttagcctttggtacacagattaagaaat-----gaaataatcattggatataacgttattactaaactgc-ctttactttataagaaaaagaca 4766246  T
Q  201 aacttaaa 208  Q
    || |||||    
T  4766247 aaattaaa 4766254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 36360347 - 36360417
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| ||||||||||||||||| ||| | ||| ||||||||||||||| |||||||||    
T  36360347 aatgaaataatcattagacataacacttttactaaactgc-ccttattttataagaaaaagataaacttaaa 36360417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 14378202 - 14378290
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||| ||||  ||| |||||||||||| |||  ||||||||||||||||||| ||| | ||||||||||||||||||| ||| |||||    
T  14378202 acacagtttaatgaatagaatgaaataatcatttaatataacacttttactaaactgc-ccttactttataagaaaaagataaatttaaa 14378290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 43460986 - 43460883
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||| || |||| |||| | ||||||||| |||||||||||| ||| |||   |||||||||||||| ||| | |||||||||||| ||||||||    
T  43460986 gtcgttttaagctttggcacacggtttaagaaatggaatgaaataatcattggat---acacttttactaaactgc-ccttactttataaggaaaagaca 43460891  T
Q  201 aacttaaa 208  Q
    || |||||    
T  43460890 aaattaaa 43460883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 44228664 - 44228611
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||| |||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  44228664 acacggattaaaaaatggaatgaaataatcattagatataacacttttactaaa 44228611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 11171940 - 11171853
Alignment:
Q  120 cacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||| ||||||||||||||| ||||||| | |||| |||||||||||||||||||   | | |||||||  ||||||||||||||||||    
T  11171940 cacaaattaagaaattgaataaaataatcaatagacataacacttttactaaatt-atcctaactttatgcgaaaaagacaaacttaaa 11171853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 29795156 - 29795234
Alignment:
Q  122 cagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaa 201  Q
    ||||||||  ||| |||||||||||| |||||| |||| |||||||||||| ||| | ||| ||||||||||||||||||    
T  29795156 cagattaatgaatggaatgaaataatcattagacataatacttttactaaactgc-ccttattttataagaaaaagacaa 29795234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 6592136 - 6592098
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattg 175  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  6592136 aatgaaataatcattagacataacacttttactaaattg 6592098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 34360197 - 34360112
Alignment:
Q  122 cagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||| |||  ||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  34360197 cagattaaggaatgaaatgaaataatcattagatataacacttttactaaactgc-ccttactttataagaaaaagacaaacttaaa 34360112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 43421076 - 43421169
Alignment:
Q  114 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||| ||||| |||||||||| |||||||||||| ||| ||||||| |||||||||||||||| | ||||||||||||||||||||||| |||||    
T  43421076 ttggcacacaaattaagaaatggaatgaaataatcattggatataatacttttactaaattgctc-ttactttataagaaaaagacaaaattaaa 43421169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 32140941 - 32141032
Alignment:
Q  117 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaat 209  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |  ||||||||||  ||||||||||| |||||    
T  32140941 gtacacagattaagaaattgaatgaaataatcattagacataacacttttactaaactgc-ccctactttataaacaaaagacaaacataaat 32141032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 34096229 - 34096123
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    ||||||||||||  | | ||||| ||||| ||||  ||||||||||| ||||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  34096229 gtcgttttaggcaattgcacacaaattaaaaaatgaaatgaaataatcattagacttaacacttttactaaattgc-ccttactttataagaaaaagaca 34096131  T
Q  201 aacttaaa 208  Q
    ||||||||    
T  34096130 aacttaaa 34096123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 56422938 - 56423044
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||  ||||||||||||||||||||||     
T  56422938 gtcgctttaggctttgacacacagattaagaaatcgaatgaaataatcattggatataacgcttttactaaactg-tctttactttataagaaaaagacg 56423036  T
Q  201 aacttaaa 208  Q
    || |||||    
T  56423037 aaattaaa 56423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 52732802 - 52732698
Alignment:
Q  103 cgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaa 202  Q
    |||||||||| |||  ||| ||||||| |||| |||||||||||| ||| |||||||||||||||||||| ||| | |||||||||||| ||||||||||    
T  52732802 cgttttaggctttgacacatagattaaaaaatggaatgaaataatcattggatataacacttttactaaactgc-ccttactttataaggaaaagacaaa 52732704  T
Q  203 cttaaa 208  Q
     |||||    
T  52732703 attaaa 52732698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 51737277 - 51737365
Alignment:
Q  117 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||| | | |||||||||  ||||||||||||||||||    
T  51737277 gtacacaaattaaggaatagaatgaaataataattagacataacacttttactaaattac-ccttactttat--gaaaaagacaaacttaaa 51737365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 39671068 - 39671151
Alignment:
Q  124 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| ||||||||| || |||||| ||||||| ||||||||| | | ||||||||||||||||||| |||||||||||    
T  39671068 gattaagaaatggaatgaaattatcattagacataacacatttactaaactac-ctttactttataagaaaaaaacaaacttaaa 39671151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 37445837 - 37445767
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  37445837 aatgaaataatcattagacataacacttttactaaactgc-ccttactttataagaaaaagacaaatttaaa 37445767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 44855457 - 44855351
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| |||| || |||| ||||| |||||||||| |||||||||||| |||  ||||||| ||||||||||| ||| | |||||||||||| ||||||||    
T  44855457 gtcgctttacgctttggcacacaaattaagaaatagaatgaaataatcattgaatataacgcttttactaaactgc-ccttactttataaggaaaagaca 44855359  T
Q  201 aacttaaa 208  Q
    || |||||    
T  44855358 aaattaaa 44855351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 51930765 - 51930683
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||| ||||| |||||||||||||||| |||||||| ||||||||||| ||| | |||||||||||||||| |||||| |||||    
T  51930765 attatgaaatggaatgaaataataattggatataacgcttttactaaactgc-ccttactttataagaaaatgacaaaattaaa 51930683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 21045328 - 21045240
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| ||| |||||||||||| ||| |||||||  |||||| |||| ||| | ||||||||||||||||||||||| |||||    
T  21045328 acacagattaaggaatggaatgaaataatcattggatataaggcttttattaaactgc-ccttactttataagaaaaagacaaaattaaa 21045240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 36805407 - 36805495
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||  | ||| |||||| ||||||||||||||||||    
T  36805407 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactg-tccttagtttatatgaaaaagacaaacttaaa 36805495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 45520419 - 45520503
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||| ||||||| |||||| ||||||||||||||||  ||| | |||| ||||||||| ||||||||||||||    
T  45520419 agattaagaaatggaataaaataatcattagacataacacttttactaagctgc-ccttacattataagaataagacaaacttaaa 45520503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 54512218 - 54512130
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||  ||||||||||||||| ||||||||  |||||||||| ||| | |||||||||||||||| |||||| |||||    
T  54512218 acacatattaagaaatgaaatgaaataataattggatataacgtttttactaaactgctc-ttactttataagaaaatgacaaaattaaa 54512130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 15501129 - 15501199
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||||| |||||| |||||||||| ||| ||| ||||||||||||||| |||||||||||    
T  15501129 aatgaaataatcattagacataacatttttactaaactgccctt-actttataagaaaaatacaaacttaaa 15501199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 42672584 - 42672496
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||| | | |  |||||||||||||||||||||| |||||    
T  42672584 acacaaattaaggaatataatgaaataatcattagacataacacttttactaaactactc-atactttataagaaaaagacaaatttaaa 42672496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 19849273 - 19849191
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||  ||| ||||||| |||| |||||||| |||||||||| ||| ||  ||||||||||||||| |||||||||||    
T  19849273 attaagaaatgaaataaaataattattacatataacatttttactaaactgccctc-actttataagaaaaaaacaaacttaaa 19849191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 31817138 - 31817232
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaa 196  Q
    |||| ||||||| |||  ||||| |||||||||| |||||||||||| ||| ||||||||  |||||||||| | | | |||||||||||||||||    
T  31817138 gtcgctttaggctttgacacacaaattaagaaatggaatgaaataatcattggatataacgtttttactaaacttc-ccttactttataagaaaaa 31817232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 3093548 - 3093467
Alignment:
Q  114 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaa 196  Q
    |||| ||| ||||||||||||||||| ||||||| |||||| |||||||||| | |||||||  | || ||||||||||||||    
T  3093548 ttggcacatagattaagaaattgaataaaataatcattagacataacactttcattaaattg-tccttcctttataagaaaaa 3093467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 56556236 - 56556320
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaa 207  Q
    |||||||||||| ||||||||||   ||| |||||| |||||||||||||||||||   | || |||||||||||||| ||||||||||    
T  56556236 acacagattaaggaattgaatga---aatcattagacataacacttttactaaatt-atccttgctttataagaaaaatacaaacttaa 56556320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 29840250 - 29840197
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| |||||| ||| |||||||||||| |||||| |||||||||||||||||    
T  29840250 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaaa 29840197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 38761788 - 38761871
Alignment:
Q  124 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||| ||||||| | |||| ||||||||||||||||||  | | ||||||||| ||| ||||||| |||||||    
T  38761788 gattaagaaatagaattaaataattaatagacataacacttttactaaatcac-ccttactttattagagaaagacacacttaaa 38761871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 50072467 - 50072374
Alignment:
Q  101 gtcgttttaggcgttggtacacagatt---aagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataaga 192  Q
    |||| ||||| | ||||||||||||||   ||||||| |||||||||||| ||| ||||||||  |||||||||| ||| | |||||||||||||    
T  50072467 gtcgctttagactttggtacacagatttataagaaatggaatgaaataatcattggatataacgtttttactaaactgc-ccttactttataaga 50072374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 29289852 - 29289936
Alignment:
Q  126 ttaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttat---aagaaaaagacaaacttaaa 208  Q
    ||||||||| |||||||||||| |||||| |||| | ||||| ||||| || |||||||||||   || |||||||||||||||||    
T  29289852 ttaagaaatggaatgaaataatcattagacataatatttttaataaatcgc-ctttactttataaaaaaaaaaagacaaacttaaa 29289936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 35928650 - 35928596
Alignment:
Q  153 gatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||| |||||||||    
T  35928650 gatatatcacttttactaaattgc-catgactttataagaaaaagataaacttaaa 35928596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 30492915 - 30492865
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttact 169  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||    
T  30492915 acacaaattaaggaatggaatgaaataatcattagacataacacttttact 30492865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 45903377 - 45903426
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||||||| |||||||||||| ||| |||||||| |||||| ||||    
T  45903377 agattaagaaatagaatgaaataatcattggatataacgcttttattaaa 45903426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 17499732 - 17499760
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  17499732 ttactttataagaaaaagacaaacttaaa 17499760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 54233953 - 54233925
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  54233953 ttactttataagaaaaagacaaacttaaa 54233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 34002086 - 34002175
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||    
T  34002086 acacagattaagaaatgaaatgaaataatcattggatataacacctttgctaaactgcactttactttataagaaaaagacaaaattaaa 34002175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 18886851 - 18886756
Alignment:
Q  112 cgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||| ||| | |||||||||||| |||||||||| |||||    
T  18886851 cgttggcacacagactaagaaatggaatgaaataatcattagatataacgcttttactaaactgc-ccttactttataaggaaaagacaaaattaaa 18886756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 3680877 - 3680965
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||| |||| |||||||||||| |||||| |||| |||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  3680877 acacagattaaaaaatggaatgaaataatcattagacataaaacttttactaaactgctc-ttactttataagaaaaagacaaatttaaa 3680965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 17869436 - 17869348
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||| |||||||  ||||||||||||||||||| |||||||||||    
T  17869436 acacagattaaggaatgaaatgaaataatcattagacataacacttttattaaattg-tctttactttataagaaaaatacaaacttaaa 17869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 36447550 - 36447653
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    ||||||||| |||||| |||||||||||||| |||||||||||| | | |||||||| |||||| |||| ||  ||||||||||||||||||||| |||     
T  36447550 gttttaggctttggtatacagattaagaaatggaatgaaataattactggatataactcttttattaaactg-tctttactttataagaaaaagataaaa 36447648  T
Q  204 ttaaa 208  Q
    |||||    
T  36447649 ttaaa 36447653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 41905874 - 41905977
Alignment:
Q  104 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaac 203  Q
    ||||||||| |||  ||||||||||||||||  | ||||||||| ||| |||||||| ||||||||||| ||| | |||||||||||||||||||||||     
T  41905874 gttttaggctttgacacacagattaagaaatgaactgaaataatcattggatataacgcttttactaaactgc-ccttactttataagaaaaagacaaaa 41905972  T
Q  204 ttaaa 208  Q
    |||||    
T  41905973 ttaaa 41905977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 34733500 - 34733420
Alignment:
Q  127 taagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||  ||||||||||| |||||| ||||||||||||||||| | | | |||||||||||||||||||||||||||||    
T  34733500 taagaaatgaaatgaaataatcattagacataacacttttactaaactac-ccttactttataagaaaaagacaaacttaaa 34733420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 28044101 - 28044183
Alignment:
Q  125 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||  ||||||||||| ||| ||||||||  |||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  28044101 attaagaaataaaatgaaataatcattggatataacgtttttactaaactgccctt-actttataagaaaaagacaaaattaaa 28044183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 42259521 - 42259591
Alignment:
Q  137 aatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||| |||||| ||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  42259521 aatgagataattattagacataacacttttactaaaatgccctt-actttataagaaaaagacaagcttaaa 42259591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 26527356 - 26527428
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaa 196  Q
    |||||||||||| ||||| |||||| |||||| ||||||| ||||||||| |||  ||||||||||||||||||    
T  26527356 agattaagaaatggaatgcaataatcattagacataacacctttactaaactgc-ttttactttataagaaaaa 26527428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 30833066 - 30833105
Alignment:
Q  136 gaatgaaataataattagatataacacttttactaaattg 175  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30833066 gaatgaaataattattagatataacacttttactaaattg 30833105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 33056242 - 33056327
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttacttta-taagaaaaagacaaacttaaa 208  Q
    |||||||| |||  ||||||||||| |||| | ||||||||||||||||| ||| | |||||||| ||||||||||||||| |||||    
T  33056242 agattaaggaatgaaatgaaataatcattaaacataacacttttactaaactgc-ccttactttattaagaaaaagacaaatttaaa 33056327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 40207379 - 40207432
Alignment:
Q  154 atataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||    
T  40207379 atataacacttttactaaactgccctt-actttataagaaaatgacaaacttaaa 40207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 32275394 - 32275306
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||||||||  ||||||||||| |||| | || ||  |||||||||| ||| |||||||||||||||||||  ||||||||||    
T  32275394 acacatattaagaaatgaaatgaaataatcattaaacatgacgtttttactaaactgc-ctttactttataagaaaaaatcaaacttaaa 32275306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 32873127 - 32873203
Alignment:
Q  126 ttaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttacttta-taagaaaaagacaaa 202  Q
    ||||||||||||||| |||||| ||||||||||||| ||||| |||||| | ||||| |||| ||||| |||||||||    
T  32873127 ttaagaaattgaatgcaataatcattagatataacatttttattaaattac-ctttattttagtaagagaaagacaaa 32873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 22627313 - 22627396
Alignment:
Q  124 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||||| |||  |||||||||||  ||| | ||||||| ||||||||| ||| ||||||||||||| || ||||||||||||||    
T  22627313 gattaaggaatgaaatgaaataatcgttaaacataacacatttactaaactgc-ctttactttataaaaataagacaaacttaaa 22627396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 40299037 - 40298984
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    ||||| |||||| |||  ||||||||||||||| || |||||||||||||||||    
T  40299037 acacaaattaaggaatgaaatgaaataataattggacataacacttttactaaa 40298984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 42010553 - 42010617
Alignment:
Q  143 ataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| |||||| |||| | |||||||||| ||| ||| | |||||||||||||||||||||||||    
T  42010553 ataatcattagacataatatttttactaaactgccctt-attttataagaaaaagacaaacttaaa 42010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 42121741 - 42121653
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||| |||  ||| ||||||| |||||| ||| ||||||||||||| ||  | ||||||||| ||||||||| | |||||||    
T  42121741 acacagattaaggaatgaaatcaaataatcattagacatatcacttttactaaactg-accttactttattagaaaaagatacacttaaa 42121653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 6521958 - 6521930
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  6521958 ttactttataagaaaaagacaaacttaaa 6521930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 10684843 - 10684871
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  10684843 ttactttataagaaaaagacaaacttaaa 10684871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 26963620 - 26963592
Alignment:
Q  180 ttactttataagaaaaagacaaacttaaa 208  Q
    |||||||||||||||||||||||||||||    
T  26963620 ttactttataagaaaaagacaaacttaaa 26963592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 12040 - 12123
Alignment:
Q  123 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    |||||||| ||| |||||||||||| |||||| ||||||||||||||||| |  || |||||||||||||||||||||||||||||    
T  12040 agattaaggaatggaatgaaataatcattagacataacacttttactaaact--gccttactttataagaaaaagacaaacttaaa 12123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 1759 - 1653
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||||| || | ||| ||||||||||||  ||||||||||| ||| ||||||||  |||||||||||||| | |||||||||||||||||||||    
T  1759 gtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatataacgtttttactaaattgc-ccttactttataagaaaaagaca 1661  T
Q  201 aacttaaa 208  Q
    || |||||    
T  1660 aaattaaa 1653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 1790 - 1690
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| |||||||||| ||  | |||||||||||||||||||||    
T  1790 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaaactg-accttactttataagaaaaagaca 1692  T
Q  201 aa 202  Q
    ||    
T  1691 aa 1690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 9529 - 9429
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagaca 200  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| |||||||||| ||  | |||||||||||||||||||||    
T  9529 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaaactg-accttactttataagaaaaagaca 9431  T
Q  201 aa 202  Q
    ||    
T  9430 aa 9429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 15994 - 16081
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataagaaaaagacaaacttaaa 208  Q
    ||||| ||||| ||||| ||||||||||| |||| |||||||| |||||||||| | | ||||||||||||| |||| ||||||||||||    
T  15994 acacatattaaaaaattaaatgaaataatcattatatataacatttttactaaactac-ctttactttataa-aaaatgacaaacttaaa 16081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 13022 - 13075
Alignment:
Q  119 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  13022 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaa 13075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 8365 - 8294
Alignment:
Q  101 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 172  Q
    |||| ||||||  |||| ||||||||||| |||| |||||||||||| ||| |||||||  |||||||||||    
T  8365 gtcgctttaggttttggcacacagattaaaaaatggaatgaaataatcattggatataaggcttttactaaa 8294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University