View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_67 (Length: 382)
Name: NF1172_low_67
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 85 - 283
Target Start/End: Original strand, 479354 - 479552
Alignment:
| Q |
85 |
aagaatatatataataaatttcttattctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactacct |
184 |
Q |
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| T |
479354 |
aagaatatatataataaatttcttcttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactacct |
479453 |
T |
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| Q |
185 |
tccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgt |
283 |
Q |
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| T |
479454 |
tccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgt |
479552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 473937 - 474022
Alignment:
| Q |
142 |
tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggt |
227 |
Q |
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| T |
473937 |
tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggt |
474022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 454763 - 454850
Alignment:
| Q |
142 |
tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg |
226 |
Q |
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| T |
454763 |
tttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg |
454850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 466498 - 466612
Alignment:
| Q |
169 |
acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag |
268 |
Q |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
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| Q |
269 |
ccctaggatatttgt |
283 |
Q |
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| T |
466598 |
tccaaggatatttgt |
466612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 27493931 - 27493832
Alignment:
| Q |
169 |
acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag |
268 |
Q |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag |
27493832 |
T |
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