View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_74 (Length: 370)
Name: NF1172_low_74
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 30314133 - 30313805
Alignment:
| Q |
28 |
caatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30314133 |
caatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
30314034 |
T |
|
| Q |
128 |
ttacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaagataagaaatgctatttttatatatccatacaaataaaactacga |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30314033 |
ttacaattaaagttaaatattattttaaacttattcttaccaaactaacttgtaagataagaaatgctatttttatatatccatacaaataaaactatga |
30313934 |
T |
|
| Q |
228 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaaggataaagtccgcatcattgtgttgtggaagaaagagggtgtga |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30313933 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtga |
30313834 |
T |
|
| Q |
328 |
ggtttggagtgatattccaaaagtcgata |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30313833 |
ggtttggagtgatattccaaaagtcgata |
30313805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 30303264 - 30302941
Alignment:
| Q |
28 |
caatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30303264 |
caatgctgccggcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
30303165 |
T |
|
| Q |
128 |
ttacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaagataagaaatgctatttttatatatccatacaaataaaactacga |
227 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
30303164 |
ttaaaattaaagttaaatattattttaaacttatttttacaaaactaacttgtaagataagaaattatatttttata-----atacaaataaaactacga |
30303070 |
T |
|
| Q |
228 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaaggataaagtccgcatcattgtgttgtggaagaaagagggtgtga |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
30303069 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtga |
30302970 |
T |
|
| Q |
328 |
ggtttggagtgatattccaaaagtcgata |
356 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
30302969 |
ggtttggagtggtattccaaaaggcgata |
30302941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 30298080 - 30297755
Alignment:
| Q |
28 |
caatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
127 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30298080 |
caatgctgccggcagggagtttgatagtatcaccgcgttcaaggttgaaggagtttctgttgtctgggttcaacacggtgagtatggctttccctgcaaa |
30297981 |
T |
|
| Q |
128 |
ttacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaagataagaaatgctatttttatatatccatacaaataaaactacga |
227 |
Q |
| |
|
||| | ||||| || | || | ||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||| | |
|
|
| T |
30297980 |
ttaaagttaaatttca---tttaatcaaacttattcttacaaaagtaacttgtaagataagaaatgatatttttatatattcaaacaaataaaactacaa |
30297884 |
T |
|
| Q |
228 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaaggataaagtccgcatcattgtgttgtggaagaaagagggtgtga |
327 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
30297883 |
aactaacttgtaagataataaattgataaatgattaattaccactaagcactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtga |
30297784 |
T |
|
| Q |
328 |
ggtttggagtgatattccaaaagtcgata |
356 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
30297783 |
ggtttggagtgatattccaaaaggcgata |
30297755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 350
Target Start/End: Complemental strand, 30290575 - 30290261
Alignment:
| Q |
28 |
caatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaaa |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||| ||||||||||| || |
|
|
| T |
30290575 |
caatgctgccggcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctgtcgttcgggttcaacacagtgagtatagctttccctgcgaa |
30290476 |
T |
|
| Q |
128 |
ttacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaagataagaaatgctatttttatatatccatacaaataaaactacga |
227 |
Q |
| |
|
||| ||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||| || |||| |||| || ||| |
|
|
| T |
30290475 |
tta------aagttaaatataattttaaacttattcctacaaaactaacttgtaaggtaagaaatgatatttttatatatacaaacaactaaa-cttcga |
30290383 |
T |
|
| Q |
228 |
aactaacttgtaaggtaataaattgataaatgattaattaccactaaggactgcaaggataaagtccgcatcattgtgttgtggaagaaagagggtgtga |
327 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30290382 |
aactaacttgtaaggtaataa-ttgataaatgtttaattaccactaagcactgcaaggataaagtcagcatcattgtgttgtggaagaaagagggtgtga |
30290284 |
T |
|
| Q |
328 |
ggtttggagtgatattccaaaag |
350 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30290283 |
ggtttggagtgatattccaaaag |
30290261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 30285603 - 30285513
Alignment:
| Q |
36 |
ccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgcaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
30285603 |
ccagcagggagtttgatggtatcaccacgctcaaggttgaaggagtttctattgttggggttcaacaccgtcagtatggctttccctgcaa |
30285513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 30285399 - 30285301
Alignment:
| Q |
255 |
aaatgattaattaccactaaggactgcaaggataaagtccgcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcg |
353 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30285399 |
aaataattaattaccactaacgactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaagagtcg |
30285301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 46809107 - 46809021
Alignment:
| Q |
39 |
gcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
125 |
Q |
| |
|
||||||||||| || |||||||| | |||||||| || |||||||||||||| | || ||||| || |||||||||||||||||| |
|
|
| T |
46809107 |
gcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
46809021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University