View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_79 (Length: 360)
Name: NF1172_low_79
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_79 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 2099733 - 2099956
Alignment:
| Q |
30 |
attttccctttctatatgttgatgcattcccactatatcatattgtacatgctcagctccttataaataagcttgtaactattgaatcattatgaaataa |
129 |
Q |
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| T |
2099733 |
attttccctttctatatgttgatgcattcccactatatcatattgtacatgctcagcttcttataaataagcttgtaactattgaatcattatgaaataa |
2099832 |
T |
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| Q |
130 |
tacactagtttaacatttcataatatggtatcagaacctggtttatatgcccttgataccatgtgaacaatctaagtttcaaaagataataacaaaacgg |
229 |
Q |
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| T |
2099833 |
tacactactttcacattttataatatggtatcagaacctcgtttgcatgctcttgataccatatgaacaatctaagtttcaaaagagaataacaaaacag |
2099932 |
T |
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| Q |
230 |
ttaggatttcatagaatatcaata |
253 |
Q |
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||||| |||||||||||||||||| |
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| T |
2099933 |
ttagggtttcatagaatatcaata |
2099956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 2483618 - 2483494
Alignment:
| Q |
236 |
tttcatagaatatcaatagttaagtccaagactttattatctaaataaaagtgaagagaagacagttttgaggagttatttattgcaaaaaagtttgtcc |
335 |
Q |
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| T |
2483618 |
tttcatagaatatcaatagttaagtccaagactttattatctaaataaaagtgaagagaagacagatttgaggagttatttattgcaaaaaagtttgtcc |
2483519 |
T |
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| Q |
336 |
ttaaaccattattttaaagacttat |
360 |
Q |
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| T |
2483518 |
ttaaaccattattttaaagacttat |
2483494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 30998124 - 30998008
Alignment:
| Q |
49 |
tgatgcattcccactatatcatattgtacatgctcagctccttataaataagcttgtaactattgaatcattatgaaataatacactagttt-aacattt |
147 |
Q |
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| T |
30998124 |
tgatgcattcccaccgtgacctattgtgcatgctcaactacctataaataagcatgtaactattgaatcattatgcaataatacactattttcctgattt |
30998025 |
T |
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| Q |
148 |
cataatatggtatcaga |
164 |
Q |
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| T |
30998024 |
cataatatggtatcaga |
30998008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 30997517 - 30997451
Alignment:
| Q |
49 |
tgatgcattcccactatatcatattgtacatgctcagctccttataaataagcttgtaactattgaa |
115 |
Q |
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| T |
30997517 |
tgatgcattcccactgtaacctattgtgcatgctcagctacctataaataagcttgtaactattgaa |
30997451 |
T |
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