View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_84 (Length: 349)
Name: NF1172_low_84
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_84 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 326
Target Start/End: Complemental strand, 33918796 - 33918508
Alignment:
| Q |
30 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgcta |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33918796 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttg-------gaaacaccgacacttcagaatatctctcaaccagagatgcta |
33918704 |
T |
|
| Q |
130 |
ctggccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33918703 |
ctggccatggatctcacacagcttcaacat-agctggatattttgtaaaaaatgcaaattatagaggacttgcttacttctggtttagcaagaggaggag |
33918605 |
T |
|
| Q |
230 |
ctaccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacggtgctgatatcctcaaagcatttgacatggcaatacatgatg |
326 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33918604 |
ctgccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacgatgctgatatcctcaaagcatttgacatggctatacatgatg |
33918508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 30 - 326
Target Start/End: Original strand, 35082613 - 35082906
Alignment:
| Q |
30 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgcta |
129 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||| | |||||||||| |
|
|
| T |
35082613 |
ctagatggttcctaaaaggaataactgatcacactaagaacctcgtccttg-------gaaacaatgacactacagaatatctctcagctagagatgcta |
35082705 |
T |
|
| Q |
130 |
ctggccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggag |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
35082706 |
ttggccatggaactcacacagcttcaacagcagctggatattttgtagaaaatgcaaattatagagg----ccttgcttctggtttagcaagaggaggag |
35082801 |
T |
|
| Q |
230 |
ctaccttagctcatttggctatctacaaagcttgctgggacgttcctgttggac--------ggtgctgatatcctcaaagcatttgacatggcaataca |
321 |
Q |
| |
|
| | |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35082802 |
cacctttagctcacttggctatctacaaagcttgctgggacgttcctgttggacactgtactgatgctgatatcctcaaagcatttgacatggctataca |
35082901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University