View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_85 (Length: 347)
Name: NF1172_low_85
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 48581004 - 48581312
Alignment:
| Q |
30 |
gaaaacactggtgttatgttatgaggagaatttacggtgagaatctctgttagtattgatggaacaatacacaatataaatactaattttttgagtttaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48581004 |
gaaaacactggtgttatgttatgaggagaatttacggtgagaatctctgttaatattgatggaacaataca--atataaatactaattttttgagtttaa |
48581101 |
T |
|
| Q |
130 |
gtgtaaattttcctagtatgtaagggatcccatttcaataccagtgctaaaatttcataaaaatggatcagctaaaaagcaacgatgaaatgggactatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48581102 |
gtgtaaattttcctagtatgtaagggatcccatttcaatactagtgctaaaatttcataaaaatggatcagctaaaaagcaacgatgaaatgggactatg |
48581201 |
T |
|
| Q |
230 |
ggagggttcgaattccaaagatacaagagaatcttctcaagttcgcatgccctccgccatgcaagaccactcctttatact-cttccatctctatgtata |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
48581202 |
ggagggttcgaattccaaagatacaagagaatcttctcaagttcgcatgccctccgccatggaagaccactcctttatactcctttcatctctatatata |
48581301 |
T |
|
| Q |
329 |
aactctctgct |
339 |
Q |
| |
|
|||||| |||| |
|
|
| T |
48581302 |
aactctatgct |
48581312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University