View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_90 (Length: 331)
Name: NF1172_low_90
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 51967812 - 51967977
Alignment:
| Q |
74 |
gcagagagggcaaacaagggtagcatggttgcgtacatgtgctgctatgcaagggaaatgaaaagcatgtgcacattctgctgtgtatattgccttaccc |
173 |
Q |
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| T |
51967812 |
gcagacagggcaaacaagggtagcatggttgcgtacatgtgctgctatgcaagggaaatgaaaagcatgtgcacattctgctgtgtatattgccttcccc |
51967911 |
T |
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| Q |
174 |
tgccctgttttcacgctattcaaacagattccacagctactctgaatcaaacaataatatcaaaat |
239 |
Q |
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| T |
51967912 |
tgccccgttttcacgctattcaaacagattccacagctactctgaatcaaacaataatatcaaaat |
51967977 |
T |
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