View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_93 (Length: 328)

Name: NF1172_low_93
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_93
NF1172_low_93
[»] chr7 (10 HSPs)
chr7 (99-328)||(46479071-46479300)
chr7 (99-328)||(46520501-46520730)
chr7 (99-328)||(46490273-46490502)
chr7 (99-294)||(46532154-46532349)
chr7 (99-295)||(46326468-46326664)
chr7 (99-295)||(46524600-46524796)
chr7 (99-295)||(46322763-46322959)
chr7 (99-324)||(46494575-46494800)
chr7 (99-327)||(46516861-46517089)
chr7 (287-328)||(46464944-46464985)
[»] chr3 (1 HSPs)
chr3 (185-295)||(7475308-7475418)
[»] chr4 (2 HSPs)
chr4 (101-202)||(88059-88157)
chr4 (164-201)||(49833648-49833685)
[»] chr1 (1 HSPs)
chr1 (101-202)||(37152073-37152171)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 46479300 - 46479071
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479300 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 46479201  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 298  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479200 gattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 46479101  T
Q  299 ttccacttggtgggtgatatcgttgctctc 328  Q
    ||||||||||||||||||||||||||||||    
T  46479100 ttccacttggtgggtgatatcgttgctctc 46479071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 46520730 - 46520501
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520730 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 46520631  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 298  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520630 gattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 46520531  T
Q  299 ttccacttggtgggtgatatcgttgctctc 328  Q
    ||||||||||||||||||||||||||||||    
T  46520530 ttccacttggtgggtgatatcgttgctctc 46520501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 46490502 - 46490273
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||||||||||||||||||||| |||||||| |||||||| || |||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  46490502 tgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggtattcatggcgccacca 46490403  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 298  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || || || || ||||||||||||    
T  46490402 gatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccattagtagctacacaatc 46490303  T
Q  299 ttccacttggtgggtgatatcgttgctctc 328  Q
    ||||| ||||| ||||| ||||||||||||    
T  46490302 ttccatttggttggtgacatcgttgctctc 46490273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 99 - 294
Target Start/End: Complemental strand, 46532349 - 46532154
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  46532349 tgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacca 46532250  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacac 294  Q
     |||| |||||||||||||||||||||||| || |||||||||||||| |||||||| || |||||||| |||||  |||||||||||||||||||    
T  46532249 aattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctccatcttcaataagcagctacac 46532154  T

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Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 46326468 - 46326664
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  46326468 tgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgccacca 46326567  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 295  Q
    |||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||| || ||||| |||| |||  |||| || ||||||||||||    
T  46326568 gattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatgttccgtcttccattagcagctacaca 46326664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 295
Target Start/End: Complemental strand, 46524796 - 46524600
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  46524796 tgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacca 46524697  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 295  Q
    ||||| ||||||  |||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||  ||||| | || |||||||||    
T  46524696 gattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacaca 46524600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 46322763 - 46322959
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  46322763 tgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgccacca 46322862  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 295  Q
    |||||| ||||| ||||| ||||| ||||| || || ||||| ||||| |||||||| || ||||| || |||||  ||||||||||||||||||||    
T  46322863 gattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccatcttcaataagcagctacaca 46322959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 324
Target Start/End: Complemental strand, 46494800 - 46494575
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| ||||||||||||||||| || |||||||||||||| || |||||  ||||||||||||| ||||||||||||||||| || |||||||||||    
T  46494800 tgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctggtactcttggcgccacca 46494701  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 298  Q
    |||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || ||||| || ||||  |||  |||  ||| ||| || ||||||    
T  46494700 gattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatgtccccagttcggtaaacagttatacaatc 46494601  T
Q  299 ttccacttggtgggtgatatcgttgc 324  Q
    ||||||||||| ||||| || |||||    
T  46494600 ttccacttggttggtgacattgttgc 46494575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 99 - 327
Target Start/End: Complemental strand, 46517089 - 46516861
Alignment:
Q  99 tgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacca 198  Q
    ||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||| ||||||||||||||    
T  46517089 tgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgccacca 46516990  T
Q  199 gattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatc 298  Q
    |||||  |||||  ||||||| || |||||  | || |||||||||||  |||||||||| ||||| ||||||||| ||||| | || |||||||||||     
T  46516989 gattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttcagttagtagctacacaatt 46516890  T
Q  299 ttccacttggtgggtgatatcgttgctct 327  Q
    || || ||||| |||||||||||||||||    
T  46516889 ttacatttggttggtgatatcgttgctct 46516861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 46464985 - 46464944
Alignment:
Q  287 agctacacaatcttccacttggtgggtgatatcgttgctctc 328  Q
    |||||||||||||||||||| || ||||| ||||||||||||    
T  46464985 agctacacaatcttccacttagttggtgacatcgttgctctc 46464944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 7475308 - 7475418
Alignment:
Q  185 tcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataa 284  Q
    ||||||||||||||||||  ||||||  |||||||||| |||| ||  || ||| | ||||| |||||||| || ||||||||| ||||  |||||||||    
T  7475308 tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataa 7475407  T
Q  285 gcagctacaca 295  Q
    |||||||||||    
T  7475408 gcagctacaca 7475418  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 88059 - 88157
Alignment:
Q  101 aatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccaccaga 200  Q
    |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| || ||||| || |||||||| ||||    
T  88059 aatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagctatggtactcttggcgccatcaga 88155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 49833685 - 49833648
Alignment:
Q  164 ggcttccctgaactctggtattcatggcgccaccagat 201  Q
    ||||||||||| || |||||||||||||||||||||||    
T  49833685 ggcttccctgatctatggtattcatggcgccaccagat 49833648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 37152171 - 37152073
Alignment:
Q  101 aatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccaccaga 200  Q
    |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| || ||||| || |||||||| ||||    
T  37152171 aatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagctatggtactcttggcgccatcaga 37152075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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