View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_97 (Length: 320)

Name: NF1172_low_97
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_97
NF1172_low_97
[»] chr1 (1 HSPs)
chr1 (30-320)||(2086829-2087118)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 2086829 - 2087118
Alignment:
Q  30 ttaaaaatgtcttaagattcgagctttgtgtatataaaaaatagttgagagagtagatctcacttaagatggccaatcagaaagattaatcctttgtaaa 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2086829 ttaaaaatgtcttaagattcgagttttgtgtatataaaaaatagttgagagagtagatctcacttaagatggccaatcagaaagattaatcctttgtaaa 2086928  T
Q  130 gacaatctatacttgtatactaataaaatggttaagaagcatgtgttaacaagcatttataaatcgccgtgagcttaactcggttagtaaggacattgca 229  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||||    
T  2086929 gacaatctatacttgtatactaataaattggttaagaagcatgtgttaacaagcatttataaatcgccgtgagtttaactcagttagtaagaatattgca 2087028  T
Q  230 tatataatacgtgaatgattggggttcaagcctcggatacccttcttattcatcttacaagtgaatttctaccactaagtttatttgacaa 320  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2087029 tatataatacgtgaatgattggggttcatgcctcagatacccttcttattcatcttacaagtgaatttctaccactaag-ttatttgacaa 2087118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University