View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_98 (Length: 315)
Name: NF1172_low_98
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_98 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34890334 - 34890111
Alignment:
| Q |
1 |
caatcttgaaattacttattaagctagactttagatagagttactagattcttacatgtacattttctcatacagtagtatattgcaagatctacttcta |
100 |
Q |
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| T |
34890334 |
caatcttgaaattacttattaagctagactttagatagagttactagatttttacatgtacattttctcatacagtagtatattgcaagatctacttcta |
34890235 |
T |
|
| Q |
101 |
attgttaatgattattattatgtat--tgtatatgtataatgtatcttaatctatcaaatttaaaatgtcactttcttcttgacacatatctttgtctca |
198 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34890234 |
attgttaatgattattattatgtattatgtatatgtatgatgtatcttaatctattaaatttaaaatgtcactttcttcttgactcatatctttgtctca |
34890135 |
T |
|
| Q |
199 |
cacgacaaaaagatatgtcgagtg |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
34890134 |
cacgacaaaaagatatgtcgagtg |
34890111 |
T |
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