View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11730_high_2 (Length: 442)
Name: NF11730_high_2
Description: NF11730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11730_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 164 - 425
Target Start/End: Original strand, 8318770 - 8319029
Alignment:
| Q |
164 |
tgtgtttcgtgggacactattgcaggatagactacccacaaaacaagagaagctttgaataaaagaggtgtcttcaacgacagtggttgaagttctaaac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8318770 |
tgtgtttcgtgggacactattgcaggatagaccacccacaaaacaagagaagctttgaataaaagacgtgtcttcaacgacagtggttgaagttctaaac |
8318869 |
T |
|
| Q |
264 |
agaacgacgatggtgggagcaactggagcagaggagatttatcatggggaggtgacagtgagcggacagataggaggcgacggtggagaaaaattcgtca |
363 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
8318870 |
agaacgacgatggtgggag--actggagtagaggagatttatcatggggaggtgacagtgagcggatagataggaggcgacggtggagaaaaatttgtcg |
8318967 |
T |
|
| Q |
364 |
ctggagggatctcaatggtgagagaccgcaccaaagggaggtgagagacatggtagttgatg |
425 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8318968 |
ctagaggaatctcaatggtgagagagagcaccaaagggaggtgagagacatggtagttgatg |
8319029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 1015083 - 1014857
Alignment:
| Q |
17 |
aaaatggacttcagacttggactttggacagatcgaatggctttggtggaaaatcctactataaactggatcagctaagaaaacttggtctaaaatattt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1015083 |
aaaaaggacttcagacttggactttggacagatcgaatggctttggtgggaaatcctactataaactgtatcggctaagaaaacttggtctaaaatattt |
1014984 |
T |
|
| Q |
117 |
cacttgctttaaatcttattcgaaaaagtgaagctccctcaagaatatgtgtttcgtgggacactattgcaggatagactacccacaaaacaagagaagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1014983 |
cacttgctttaaatcttattcgaaaaagtgaagctccctcaaaaatatgtgtttcgtgggacactattgcaggatagaccacccacaaaacaagagaagc |
1014884 |
T |
|
| Q |
217 |
tttgaataaaagaggtgtcttcaacga |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1014883 |
tttgaataaaagaggtgtcttcaacga |
1014857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 40637851 - 40638071
Alignment:
| Q |
16 |
caaaatggacttcagacttggactttggacagatcgaatggctttggtggaaaatcctactataaactggatcagctaagaaaacttggtctaaaatatt |
115 |
Q |
| |
|
||||| |||||| ||||| |||| ||||||| || |||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||| || |
|
|
| T |
40637851 |
caaaaaggactttagactaggacattggacatatggaatggctttggtgtgaaatcctactataaactgtatcagttaggaaaacttggtctaaaatctt |
40637950 |
T |
|
| Q |
116 |
tcacttgctttaaatcttattcgaaaaagtgaagctccctcaagaatatgtgtttcgtgggacactattgcaggatagactacccacaaaacaagagaag |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
40637951 |
tgacttgctttaaatcttattcgaaaaagtgaagctccctc-agaa-atgtgtttggttggacactattgcaggatagaccaccc-----acaagagaag |
40638043 |
T |
|
| Q |
216 |
ctttgaataaaagaggtgtcttcaacga |
243 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
40638044 |
ctttgaacaaaagaggtgtcttcaacga |
40638071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University