View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11730_low_1 (Length: 689)

Name: NF11730_low_1
Description: NF11730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11730_low_1
NF11730_low_1
[»] chr1 (25 HSPs)
chr1 (1-689)||(52263597-52264281)
chr1 (39-136)||(10324926-10325024)
chr1 (30-136)||(48548993-48549098)
chr1 (29-132)||(1514346-1514450)
chr1 (29-91)||(1233350-1233412)
chr1 (30-136)||(28083867-28083974)
chr1 (48-136)||(8381965-8382054)
chr1 (33-136)||(3016161-3016265)
chr1 (74-125)||(33693031-33693083)
chr1 (30-93)||(7524156-7524219)
chr1 (30-136)||(9939708-9939814)
chr1 (39-133)||(11049252-11049347)
chr1 (36-93)||(213522-213579)
chr1 (30-125)||(6041485-6041578)
chr1 (37-93)||(3416123-3416179)
chr1 (70-133)||(3515820-3515884)
chr1 (50-133)||(6021806-6021890)
chr1 (29-89)||(27500332-27500392)
chr1 (30-125)||(20720826-20720919)
chr1 (30-134)||(30557505-30557608)
chr1 (59-93)||(43959638-43959672)
chr1 (37-93)||(47053449-47053503)
chr1 (53-93)||(7790644-7790684)
chr1 (61-93)||(17284139-17284171)
chr1 (72-115)||(29759632-29759676)
[»] chr7 (14 HSPs)
chr7 (29-136)||(38123644-38123752)
chr7 (30-136)||(27571861-27571968)
chr7 (62-136)||(30182307-30182382)
chr7 (30-136)||(40561737-40561844)
chr7 (30-136)||(41788315-41788422)
chr7 (50-136)||(597945-598031)
chr7 (30-93)||(40491621-40491684)
chr7 (30-93)||(45557408-45557471)
chr7 (31-93)||(40795969-40796031)
chr7 (30-92)||(44365581-44365642)
chr7 (54-91)||(18349820-18349857)
chr7 (146-174)||(883341-883369)
chr7 (146-174)||(1242670-1242698)
chr7 (30-117)||(22310438-22310526)
[»] chr6 (21 HSPs)
chr6 (30-136)||(34620885-34620992)
chr6 (30-136)||(34748322-34748429)
chr6 (30-136)||(1485125-1485232)
chr6 (36-136)||(852531-852632)
chr6 (30-134)||(882687-882792)
chr6 (30-125)||(31305826-31305922)
chr6 (30-136)||(4910907-4911014)
chr6 (50-125)||(9505780-9505856)
chr6 (41-115)||(17225872-17225947)
chr6 (30-90)||(957602-957662)
chr6 (38-136)||(2234514-2234614)
chr6 (36-91)||(24982338-24982393)
chr6 (30-136)||(34063311-34063418)
chr6 (31-93)||(34027397-34027459)
chr6 (32-77)||(12766640-12766685)
chr6 (53-136)||(5724632-5724716)
chr6 (41-93)||(8854963-8855015)
chr6 (37-93)||(25388120-25388175)
chr6 (29-136)||(26280604-26280711)
chr6 (66-125)||(30926793-30926853)
chr6 (104-136)||(35098228-35098260)
[»] chr4 (17 HSPs)
chr4 (37-125)||(10185204-10185293)
chr4 (35-136)||(32818354-32818456)
chr4 (30-136)||(55927749-55927856)
chr4 (34-93)||(41751255-41751314)
chr4 (37-93)||(4243430-4243486)
chr4 (50-125)||(33843987-33844063)
chr4 (30-136)||(8604601-8604708)
chr4 (30-136)||(47144214-47144320)
chr4 (50-92)||(32100336-32100378)
chr4 (60-125)||(37439155-37439221)
chr4 (30-91)||(4451503-4451564)
chr4 (32-93)||(47596282-47596343)
chr4 (31-91)||(22683909-22683969)
chr4 (29-136)||(29904231-29904339)
chr4 (31-88)||(25319096-25319153)
chr4 (30-83)||(33843764-33843817)
chr4 (210-277)||(9504582-9504650)
[»] chr3 (22 HSPs)
chr3 (30-133)||(3776524-3776628)
chr3 (30-132)||(27266773-27266876)
chr3 (43-136)||(7717320-7717407)
chr3 (32-134)||(35264392-35264495)
chr3 (30-123)||(38332533-38332627)
chr3 (30-121)||(584772-584864)
chr3 (32-135)||(5046061-5046165)
chr3 (30-125)||(35253446-35253542)
chr3 (33-136)||(40147832-40147936)
chr3 (30-93)||(46853513-46853576)
chr3 (34-135)||(36302183-36302285)
chr3 (30-91)||(29475364-29475425)
chr3 (30-93)||(33791984-33792048)
chr3 (29-93)||(51285613-51285677)
chr3 (32-133)||(5406908-5407008)
chr3 (30-136)||(25359553-25359660)
chr3 (30-136)||(37335013-37335120)
chr3 (30-93)||(41596128-41596191)
chr3 (38-91)||(190871-190924)
chr3 (53-136)||(35058360-35058445)
chr3 (31-92)||(52925603-52925663)
chr3 (31-91)||(41115029-41115089)
[»] chr8 (7 HSPs)
chr8 (30-136)||(26100125-26100232)
chr8 (30-135)||(32927892-32927998)
chr8 (49-136)||(13384652-13384740)
chr8 (3-136)||(35495259-35495397)
chr8 (32-91)||(2924822-2924881)
chr8 (30-135)||(16972043-16972149)
chr8 (30-87)||(32767436-32767495)
[»] chr2 (17 HSPs)
chr2 (37-135)||(42982544-42982643)
chr2 (32-88)||(1976845-1976901)
chr2 (30-125)||(44439264-44439360)
chr2 (30-136)||(4894136-4894243)
chr2 (30-136)||(42740976-42741082)
chr2 (65-136)||(10618955-10619027)
chr2 (52-136)||(37420196-37420283)
chr2 (210-281)||(38191998-38192070)
chr2 (127-174)||(7629750-7629797)
chr2 (31-90)||(7632815-7632874)
chr2 (30-76)||(15220840-15220886)
chr2 (29-79)||(40401621-40401671)
chr2 (30-87)||(16518827-16518884)
chr2 (50-122)||(33961980-33962053)
chr2 (95-135)||(488565-488605)
chr2 (127-171)||(3654743-3654787)
chr2 (68-115)||(41494088-41494136)
[»] scaffold0361 (1 HSPs)
scaffold0361 (30-136)||(14093-14199)
[»] chr5 (16 HSPs)
chr5 (63-125)||(24306108-24306171)
chr5 (63-125)||(24367145-24367208)
chr5 (31-133)||(36639939-36640042)
chr5 (30-119)||(15368489-15368579)
chr5 (31-93)||(10898764-10898825)
chr5 (31-81)||(35439171-35439221)
chr5 (31-89)||(37877105-37877163)
chr5 (30-87)||(4306561-4306618)
chr5 (29-93)||(35073416-35073480)
chr5 (31-91)||(43012410-43012469)
chr5 (34-81)||(117479-117526)
chr5 (30-93)||(8591524-8591587)
chr5 (32-91)||(37886019-37886078)
chr5 (3-93)||(9184965-9185057)
chr5 (59-91)||(7925431-7925463)
chr5 (59-91)||(29923287-29923319)
[»] scaffold0314 (1 HSPs)
scaffold0314 (30-136)||(17132-17239)
[»] scaffold0636 (1 HSPs)
scaffold0636 (29-93)||(7747-7811)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 52263597 - 52264281
Alignment:
Q  1 tatgtatgtttggttttgcagtgagaaaaatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263597 tatgtatgtttggttttgcagtgagaaaaatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatgaat 52263696  T
Q  101 cagaagctacaatttctagcttcaaatagaatcaatcatgactacttcaaaagtggaaccaaacatacactaaagtagtatgtttggatgggctgtgaat 200  Q
    |               |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52263697 c---------------tagcttcaaatagaatcaattatgactacttcaaaagtggaaccaaacatacactaaagtagtatgtttggatgggctgtgagt 52263781  T
Q  201 ttggcactatgattttgttgaagctctgaagtatagtgtttgccaaatcgtggtggctcattgtgattctgccaatctcactaccagtccaaacatacac 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263782 ttggcactatgattttgttgaagctctgaagtacagtgtttgccaaatcgtggtggctcattgtgattctgccaatctcactaccagtccaaacatacac 52263881  T
Q  301 tcgggatgtttgagtgagttttgtannnnnnnggaacatgttcttggtttcaacttaagtagaagaacaccagaagtatatgtagttaaatttgtaattt 400  Q
    | |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263882 ttgggatgtttgagtgagttttgtatttttttggaacatgttcttggtttcaacttaagtagaagaacaccagaagtatatgtagttaaatttgtaattt 52263981  T
Q  401 attaagttacgagttgaccatttagtatttatcttgcttaaggtatccgataaagaaactcaattatgatgctattaatggga-----nnnnnnnnnncc 495  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                     
T  52263982 attaagttacgagttgactattgagtatttatcttgcttaaggtatccaataaagaaactcaattatgatgctattaatgggattttttttttttttttt 52264081  T
Q  496 gaagaagctattaatggaaattttaagaggaatgttatgaagtaagacttcattatacgagtttactgttattaatccgtagtagagt------tatgta 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||      ||||||    
T  52264082 gaagaagctattaatggaaattttaagaggaatgttatgaagtaagactttattatacgagtttactgttattaatccgtagtagagttaatgctatgta 52264181  T
Q  590 gacatgtctgccaaacatcaaagttgtcttatttggattctaattgttagaccttgagtagcttcaatttgttggttacggtgttcttgtgtcttgatgt 689  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52264182 gacatgtctgccaaacatcaaagttgttttatttggattctaattgttagaccttgagtagcttcaatttgttggttacggtgttcttgtgtcttgatgt 52264281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 10324926 - 10325024
Alignment:
Q  39 tggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||| |||| |||||    
T  10324926 tggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaat 10325024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 48548993 - 48549098
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||||| |||||||| |||||||| |||||| ||||||||||  |||| |||||||||||  | ||||||||||||||||||||||||||||| ||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagta 48549090  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  48549091 gaatcaat 48549098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 1514450 - 1514346
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaat 127  Q
    ||||| |||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||| ||  ||| | ||||||||| | |||||||||| |    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagt 1514351  T
Q  128 agaat 132  Q
    |||||    
T  1514350 agaat 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 1233412 - 1233350
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||| |||||||| |||| ||| |||||| ||||||||||||||||||||||||||    
T  1233412 aatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 28083867 - 28083974
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||||||| ||| |||||||| |||| | |||   ||||||| |||||||||| ||| || |||||| ||||||||| |||||||||||| ||    
T  28083867 atttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagta 28083966  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  28083967 gaatcaat 28083974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 8382054 - 8381965
Alignment:
Q  48 taatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||| ||||| |||||| ||||||||| |||| |||||||||||||  | |||  ||| |||||||||||||||||||| ||||||||||    
T  8382054 taatataaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaagtagaatcaat 8381965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 3016265 - 3016161
Alignment:
Q  33 tatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaa 131  Q
    |||||||||||||||| |||||||| |||||| |||  |||||||  ||||||| ||||||  | |||||| ||||||||| |||||  ||||| |||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaa 3016166  T
Q  132 tcaat 136  Q
    |||||    
T  3016165 tcaat 3016161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 33693083 - 33693031
Alignment:
Q  74 atttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  33693083 atttgagtgtaaaaatcaattatagaatcaaaagctacaatttctagcttcaa 33693031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 7524219 - 7524156
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| |||||||| ||||| |||||||| |||||| ||| ||||||||| ||||||||||||||    
T  7524219 atttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaat 7524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 9939708 - 9939814
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa-taatgaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||| | ||||| || |||||||  |||||| || ||||||||||||||||||| |||| ||| |||| |||||||||||||| ||||||  | ||    
T  9939708 atttatgtctagatacgttcatgtaaag-tgagttgaataataaatttgagtgtaaaattcaattaaggaattagaagctacaatttttagcttatagta 9939806  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  9939807 gaatcaat 9939814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 11049347 - 11049252
Alignment:
Q  39 tggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatc 133  Q
    |||||||||| | |||||| ||| || ||| ||||||||| ||||||||||||||  | |||||| ||||||||| | |||||||||| |||||||    
T  11049347 tggatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 213522 - 213579
Alignment:
Q  36 gtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||||| |||| |||||||| |||||| ||||| |||||||||| |||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaat 213579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 6041578 - 6041485
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||||||  |||||||| |||||||||||||||| |||||| |||||| ||||  | |||||| | ||| ||| ||||||||||||    
T  6041578 atttatgtttggatacat--atgtaaaagtgagttaaacaataaa-ttgagtctaaaaaacaattctagaatcaaaggcttcaaattctagcttcaa 6041485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 3416179 - 3416123
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||||||||  || ||||| |||||||||| ||||||||| ||||||||||||||    
T  3416179 tttggatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaat 3416123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 3515884 - 3515820
Alignment:
Q  70 ataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatc 133  Q
    |||| |||||||||||||||||||  | |||| | |||||||||||||||||||||| |||||||    
T  3515884 ataattttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 6021890 - 6021806
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatc 133  Q
    |||||||| |||||| ||| ||||| ||||||||||||||| || || |||||| ||||||||  | |||||||||| |||||||    
T  6021890 atgtaaaagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatc 6021806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 27500392 - 27500332
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaat 89  Q
    ||||||||| |||||   || |||||||| |||||| ||||||||||||||||||||||||    
T  27500392 aatttatgtctggatgtgttcatgtaaaaatgagttgaacaataaatttgagtgtaaaaat 27500332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 20720919 - 20720826
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||| |||||   |||||| |||||| ||  |||||||||| |||||||||||||  | |||||| ||| |||||||||||| |||||    
T  20720919 atttatgtttggacacatt---gtaaaagtgagttgaaggataaatttgattgtaaaaatcaattctagaatcataagttacaatttctagattcaa 20720826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 30557608 - 30557505
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||||||||||| || ||||| |||||| ||| ||||||||  |||| |||||||||  | |||||| || |||||| | |||||||||| ||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaattt--gtgtgaaaatcaattctagaatcaaaaactacaaatcctagcttcaacta 30557511  T
Q  129 gaatca 134  Q
    ||||||    
T  30557510 gaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 43959672 - 43959638
Alignment:
Q  59 tgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||||||||||||||||| |||||||||||    
T  43959672 tgagttaaacaataaatttgagtctaaaaatcaat 43959638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 47053503 - 47053449
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||||||||| |||||||| |||||||||| |||||  ||||||||||| |||||    
T  47053503 tttggatacattcatgtaaaagtgagttaaactataaa--tgagtgtaaaattcaat 47053449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 7790644 - 7790684
Alignment:
Q  53 taaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||| |||||| ||||||||||||| ||||||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaat 7790684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 17284171 - 17284139
Alignment:
Q  61 agttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| ||||||||||||||||||||||||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaat 17284139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 29759676 - 29759632
Alignment:
Q  72 aaatttgagtgtaaaaatcaataat-gaatcagaagctacaattt 115  Q
    |||||||||||||||||||||| || |||||||||||| ||||||    
T  29759676 aaatttgagtgtaaaaatcaattatagaatcagaagctccaattt 29759632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 38123644 - 38123752
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaat 127  Q
    ||||| |||| ||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||| |    
T  38123644 aatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagt 38123743  T
Q  128 agaatcaat 136  Q
    |||||||||    
T  38123744 agaatcaat 38123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 27571968 - 27571861
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||| ||||||||||| |||||||  |||||| || |||||| |||||||| |||||||||  | |||||| ||||| ||||||||| |||||| ||    
T  27571968 atttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagta 27571869  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  27571868 gaatcaat 27571861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 30182307 - 30182382
Alignment:
Q  62 gttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||||||||||||||||||||||||| |||  | |||||| |||||||||||| ||||||||| ||||||||||    
T  30182307 gttaaacaataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaat 30182382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 40561737 - 40561844
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||| |||| |||  | || | | || |||||||||||| |||||| ||    
T  40561737 atttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaattctagacttacaaactacaatttctaacttcaagta 40561836  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  40561837 gaatcaat 40561844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 41788422 - 41788315
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||| |||||||||| ||||| |||||| ||||  |||||||||||| ||||||||| || || ||| ||| | ||||||||||||| || ||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatttctagctttaagta 41788323  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  41788322 gaatcaat 41788315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 597945 - 598031
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||||| |||||| |||||||||||| |||| || ||||||| || |||||  |||||||||||| ||||||||| ||||||||||    
T  597945 atgtaaaagtgagttgaacaataaattttagtgcaagaatcaattatagaatcgaaagctacaattt-tagcttcaagtagaatcaat 598031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 40491684 - 40491621
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||| |||||||||||| |||||||| ||||||||||  |||||||| |||||||| |||||    
T  40491684 atttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaat 40491621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 45557471 - 45557408
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| |||||||||||||| |||||||| |||||| | | | ||||||| ||||||||||||||    
T  45557471 atttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaat 45557408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 40795969 - 40796031
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||| ||||||||||| |||||||| ||| || || | ||||||||||||| |||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaat 40796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 44365581 - 44365642
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa 92  Q
    ||||||| | |||||||||||||||||| |||| | ||||||| ||||||||||| |||||||    
T  44365581 atttatgataggatacattaatgtaaaagtgag-tgaacaatacatttgagtgtataaatcaa 44365642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 18349857 - 18349820
Alignment:
Q  54 aaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  18349857 aaaattgagttgaacaataaatttgagtgtaaaaatca 18349820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 883369 - 883341
Alignment:
Q  146 ttcaaaagtggaaccaaacatacactaaa 174  Q
    |||||||||||||||||||||||||||||    
T  883369 ttcaaaagtggaaccaaacatacactaaa 883341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 1242698 - 1242670
Alignment:
Q  146 ttcaaaagtggaaccaaacatacactaaa 174  Q
    |||||||||||||||||||||||||||||    
T  1242698 ttcaaaagtggaaccaaacatacactaaa 1242670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 22310438 - 22310526
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttct 117  Q
    |||||||||||||||||||   |||||| ||| || || ||||||||| ||||||||||| |||  | |||| |||||||| |||||||    
T  22310438 atttatgtttggatacattctcgtaaaagtgaattgaaaaataaatttaagtgtaaaaattaattctagaattagaagctataatttct 22310526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 34620992 - 34620885
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| |||||| || ||||||||| |||||||||||||||  | |||||||||||||  |||||||||||||  ||    
T  34620992 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgta 34620893  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  34620892 gaatcaat 34620885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 34748429 - 34748322
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| |||||| || ||||||||| |||||||||||||||  | |||||||||||||  |||||||||||||  ||    
T  34748429 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgta 34748330  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  34748329 gaatcaat 34748322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 1485125 - 1485232
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||| ||||||||||| | |||||||| |||||| |||||||||||||||||| |||||||||  | |||||| ||||| |||||||||| ||||| ||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagta 1485224  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  1485225 gaatcaat 1485232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 852632 - 852531
Alignment:
Q  36 gtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatca 134  Q
    ||||| || |||| |||||||| |||||||||||||| ||||| ||||||||||||||  | ||||||||| ||||||||||||||||||| | ||||||    
T  852632 gtttgtatgcattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatca 852533  T
Q  135 at 136  Q
    ||    
T  852532 at 852531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 882792 - 882687
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa-taatgaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||| |  |||||||||| ||| | | | ||||||||| ||    
T  882792 atttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttttgaatcagaacctagactgtttagcttcaagta 882693  T
Q  129 gaatca 134  Q
    ||||||    
T  882692 gaatca 882687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 31305826 - 31305922
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||||||||||||| ||||||||  | |||||| ||||| |||||| |||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaa 31305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 4911014 - 4910907
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| |||||  ||| |||||||||  ||| |||||||||  | |||||| ||||||||| |  ||||||||| ||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagta 4910915  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  4910914 gaatcaat 4910907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 9505856 - 9505780
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    |||||||| || ||| |||||||||||||||| ||||||||||| || |||||| ||||| ||||||||| ||||||    
T  9505856 atgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttctatcttcaa 9505780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 17225947 - 17225872
Alignment:
Q  41 gatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaattt 115  Q
    |||||||| ||||||||||||||| ||| |||||||||  |||||||||||||  | |||||| ||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaattt 17225872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 957602 - 957662
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatc 90  Q
    ||||||||||||||||||| |||||||| |||||||||   ||| |||| |||||||||||    
T  957602 atttatgtttggatacattcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatc 957662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 2234614 - 2234514
Alignment:
Q  38 ttggatacattaatgtaaaactgagttaaacaa-taaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaa 135  Q
    ||||||||||| |||||| | |||||| ||||| ||||||||||||| |||||||||  | |||||| ||||| || ||| ||||||||| | |||||||    
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaa 2234515  T
Q  136 t 136  Q
    |    
T  2234514 t 2234514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 24982393 - 24982338
Alignment:
Q  36 gtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||| ||||||| |||||||| | |||| ||||| ||||||||||||||||||||    
T  24982393 gtttgtatacattcatgtaaaagtaagttgaacaaaaaatttgagtgtaaaaatca 24982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 34063418 - 34063311
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||||||| || ||| |||||||| || ||| |||||||| ||||| ||||||| | |||  | |||| |||| ||||||||||||||||  | ||    
T  34063418 atttatgtttggttatatttatgtaaaagtgggtttaacaataagtttgattgtaaaagttaattctagaatgagaacctacaatttctagcttatagta 34063319  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  34063318 gaatcaat 34063311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 34027397 - 34027459
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||| || |||| ||| |||||| | |||||| || |||||||||||||||||||||||||    
T  34027397 tttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaat 34027459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 12766640 - 12766685
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaattt 77  Q
    |||||||| |||||||| ||| |||| |||||||||||||||||||    
T  12766640 ttatgttttgatacattcatgcaaaagtgagttaaacaataaattt 12766685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 5724632 - 5724716
Alignment:
Q  53 taaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    ||||| |||||||||  ||| ||||| |||||||||||||| || |||| | ||| ||||| | |||||||||| ||||||||||    
T  5724632 taaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaat 5724716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 8855015 - 8854963
Alignment:
Q  41 gatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||||||||||| | |||| ||| |||||||||  |||||||||||||    
T  8855015 gatacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaatcaat 8854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 25388175 - 25388120
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||||| ||| |||||||| |||||| | |||||||||||||||| |||||||||    
T  25388175 tttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaat 25388120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 26280711 - 26280604
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatg-aatcagaagctacaatttctagcttcaaat 127  Q
    ||||||||||| ||||  ||| ||||||| |||||| ||| |||||||||   ||||||||||||  || ||||| || |||||| |||||||||||| |    
T  26280711 aatttatgtttagatatgtta-tgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagt 26280613  T
Q  128 agaatcaat 136  Q
     ||||||||    
T  26280612 ggaatcaat 26280604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 30926793 - 30926853
Alignment:
Q  66 aacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||||||||||||||||  | |||| | || || ||||||||||||||||    
T  30926793 aacaataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaa 30926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 35098228 - 35098260
Alignment:
Q  104 aagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||||||||||||||||||| ||||||||||    
T  35098228 aagctacaatttctagcttcaattagaatcaat 35098260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 10185293 - 10185204
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  | |||||| ||||| ||||||||| ||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttcaa 10185204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 32818354 - 32818456
Alignment:
Q  35 tgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatc 133  Q
    |||||||||||||| |||||||| | |||| ||| ||||||||| ||| ||||||||||  | |||||| ||||||||| ||||||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatc 32818453  T
Q  134 aat 136  Q
    |||    
T  32818454 aat 32818456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 55927749 - 55927856
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| ||| || |||||||||||||||||| |  ||||||  | ||||||||||||||||||| |||| |||| |     
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaagtg 55927848  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  55927849 gaatcaat 55927856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 41751255 - 41751314
Alignment:
Q  34 atgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| ||| |||||||||||    
T  41751255 atgtttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaaatcaat 41751314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 4243486 - 4243430
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||| ||||| |||||||| |||||  ||||||||||||||||||||||||||||    
T  4243486 tttggagacattgatgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaat 4243430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 33844063 - 33843987
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    |||||||| | |||| |||||||||||||||||| |||||||||  | |||||| ||||| ||||||||||||||||    
T  33844063 atgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttcaa 33843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 8604601 - 8604708
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||||||| ||  || ||| ||||||||| |||| |||||||||  | |||||  ||||||||| |  ||||||||| ||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagta 8604700  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  8604701 gaatcaat 8604708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 47144320 - 47144214
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| || ||||| | ||||  ||||||||||| || |||||||||||| || |||||| || ||| ||||| || ||||||||     
T  47144320 atttatgtttggatacattcatctaaaagttagttggacaataaattttagcgtaaaaatcaattatagaatcataaacta-aatttttaacttcaaatt 47144222  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  47144221 gaatcaat 47144214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 32100378 - 32100336
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa 92  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  32100378 atgtaaaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 37439221 - 37439155
Alignment:
Q  60 gagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||| ||||||||| |||||||||||||||||| || |||| | |||||| |||||||||||||||    
T  37439221 gagttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttcaa 37439155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 4451564 - 4451503
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||||  ||||||| |||||| || |||||||||||||||||||  |||||||||    
T  4451564 atttatgtttgggcacattaacgtaaaagtgggttaaacaataaatttgaggctaaaaatca 4451503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 47596282 - 47596343
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||| || |||| ||| |||||||| || | ||||||||||||||||||||||||||||||    
T  47596282 ttatgatttgatagatttatgtaaaaatgggctaaacaataaatttgagtgtaaaaatcaat 47596343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 22683969 - 22683909
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    |||||||||||| ||||| ||||||||  ||||| |||||||||||| | |||||||||||    
T  22683969 tttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaaatca 22683909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 29904339 - 29904231
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaat 127  Q
    ||||||||||  |||| ||| | |||| | ||| || ||||||||||||||||||||| |||| |  | |||| |||||||||||||||| |||| || |    
T  29904339 aatttatgttatgatatattcaagtaatagtgaattgaacaataaatttgagtgtaaacatcagttctagaattagaagctacaatttcttgctttaagt 29904240  T
Q  128 agaatcaat 136  Q
    |||||||||    
T  29904239 agaatcaat 29904231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 25319153 - 25319096
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaa 88  Q
    ||||||||| |||||||| | |||||| |||||| |||||||||||| ||| ||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatttcagtataaaaa 25319096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 33843817 - 33843764
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgt 83  Q
    ||||||||||||||| ||| |||||| | |||||| ||||||||||| ||||||    
T  33843817 atttatgtttggatatattcatgtaatagtgagttgaacaataaattcgagtgt 33843764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 9504582 - 9504650
Alignment:
Q  210 tgattttgttgaagctctgaagtatagtgtttgccaaa-tcgtggtggctcattgtgattctgccaatc 277  Q
    |||||||||||||||||  |||| |||  ||||||||| | | ||||||||| ||||||||||||||||    
T  9504582 tgattttgttgaagctccaaagtctagcttttgccaaaattgcggtggctcactgtgattctgccaatc 9504650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 3776628 - 3776524
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||| ||||||||||| |||||||| |||||| | ||| |||||||||||||||||| |||  | ||||||||||||||||||||||| ||||| ||    
T  3776628 atttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctacaatttctagattcaagta 3776529  T
Q  129 gaatc 133  Q
    |||||    
T  3776528 gaatc 3776524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 27266773 - 27266876
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa-taatgaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||||| ||||  || |||||||| | |||| |||||||||||||||||||||||| || |  |||||||  ||||||||||||||||||||| ||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagta 27266872  T
Q  129 gaat 132  Q
    ||||    
T  27266873 gaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 7717320 - 7717407
Alignment:
Q  43 tacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatgaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||| ||||| || |||||| |||||||||||||||||||||  || |    ||||||||||||||||||||||||||||| ||||||||||    
T  7717320 tacattcatgtagaagtgagttgaacaataaatttgagtgtaaa--tcga----gaatcagaagctacaatttctagcttcaagtagaatcaat 7717407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 35264392 - 35264495
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaataga 130  Q
    |||||||||| |||||| |||||||| ||| || |||||||||||| ||||| |||||||||  | |||||| |||||  ||||||||| ||||| ||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaagtaga 35264491  T
Q  131 atca 134  Q
    ||||    
T  35264492 atca 35264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 38332533 - 38332627
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttc 123  Q
    ||||||||||| ||||||| ||| | || |||||| ||||||||||||||||||||| | ||||  | |||||||||||| |||||| |||||||    
T  38332533 atttatgtttgtatacattcatggataaatgagttgaacaataaatttgagtgtaaataccaattttagaatcagaagctccaatttgtagcttc 38332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 584772 - 584864
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa-taatgaatcagaagctacaatttctagct 121  Q
    |||| |||||||||||||| |||||||| |||| |||||||| ||||||| || ||||||||| | | ||||   ||||||||||||||||||    
T  584772 atttctgtttggatacatttatgtaaaagtgagctaaacaattaatttgactgcaaaaatcaattcaagaatttaaagctacaatttctagct 584864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 5046061 - 5046165
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatgaatca-gaagctacaatttctagcttcaaataga 130  Q
    ||||||||||||||||| ||||| || | | || ||||||||| |||| ||||||||||||| |||||  | ||  ||||||||||||||||||| || |    
T  5046061 ttatgtttggatacattcatgtacaagtaacttgaacaataaacttgactgtaaaaatcaattatgaaatatgactctacaatttctagcttcaagtata 5046160  T
Q  131 atcaa 135  Q
    |||||    
T  5046161 atcaa 5046165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 35253446 - 35253542
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    |||||| |||||| ||| | |||||||| |||||| ||  ||||||||||||||||||||||||  | ||| |||||||||| ||||| ||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaaccagaagctactatttccagcttcaa 35253542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 40147832 - 40147936
Alignment:
Q  33 tatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaa 131  Q
    ||||||||||||||||||||||||| |||||| ||  |||||||  |||||  ||||||||  | |||||| ||||| ||| ||||||||| || |||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaa 40147931  T
Q  132 tcaat 136  Q
    |||||    
T  40147932 tcaat 40147936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 46853513 - 46853576
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||  ||||| ||| |||||||| |||||| |||||||||||||||||| |||||||||    
T  46853513 atttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaat 46853576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 36302285 - 36302183
Alignment:
Q  34 atgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaat 132  Q
    |||| ||||| |||| |||||||| |||||| |||||||||||| ||||  |||||||||  |  ||||| || || |||| ||||||||||||||||||    
T  36302285 atgtgtggattcattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaat 36302186  T
Q  133 caa 135  Q
    |||    
T  36302185 caa 36302183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    |||||||||| ||||| || |||| |||||||||| ||||| |||||||||||| |||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 33791984 - 33792048
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagtt-aaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| |||||||||| ||| |||||||| |||||| |||||||||||||  ||||||||||||||    
T  33791984 atttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaaatcaat 33792048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 51285677 - 51285613
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| ||| ||||||||||| ||||||||  | ||||||||| ||||||||||| ||||||||||    
T  51285677 aattcatgcttggatacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaat 51285613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 5407008 - 5406908
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataatg-aatcagaagctacaatttctagcttcaaataga 130  Q
    ||||||||||||||||| |||||||| ||| || || | ||||||||  | |||||||||||  |  ||||||||||||| |||||||||||| | ||||    
T  5407008 ttatgtttggatacattcatgtaaaagtgatttgaagagtaaatttg--tttaaaaatcaattctataatcagaagctaccatttctagcttcgagtaga 5406911  T
Q  131 atc 133  Q
    |||    
T  5406910 atc 5406908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 25359553 - 25359660
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||||||||||| || || || ||| || |||||||||| || |||| ||||||||| || |||| | || |||||| ||||| |||||| ||    
T  25359553 atttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagta 25359652  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  25359653 gaatcaat 25359660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 37335013 - 37335120
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||| || ||||||| || ||||| |||||| |||||| ||||  |||||||||||||||  | |||||| ||||||| ||||||| |||| | ||    
T  37335013 atttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctacgatttctaacttctagta 37335112  T
Q  129 gaatcaat 136  Q
     |||||||    
T  37335113 aaatcaat 37335120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 41596128 - 41596191
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||| |||||||||||||| ||| |||| ||||| |||| ||||| ||| ||||||||||||||    
T  41596128 atttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaat 41596191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 190924 - 190871
Alignment:
Q  38 ttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||    
T  190924 ttggatacattcacgtgaaagtgagttgaacaataaatttgagtgcaaaaatca 190871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 35058445 - 35058360
Alignment:
Q  53 taaaactgagttaaacaataa-atttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    ||||| |||||| |||||||| |||||||||| |||||||||  | |||||| |||||  ||||||||||| ||| ||||||||||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaat 35058360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 52925603 - 52925663
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaa 92  Q
    |||||||||||||||  ||||||||||  |||| ||| |||| |||||||||||||||||||    
T  52925603 tttatgtttggataccgtaatgtaaaagcgagt-aaataatacatttgagtgtaaaaatcaa 52925663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41115029 - 41115089
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||||||||||    ||||| ||| ||||||||||| ||| |||||||||||||    
T  41115029 tttatgtttggatacatttgcataaaagtgacttaaacaataagtttcagtgtaaaaatca 41115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 26100125 - 26100232
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| ||||||||| |||| |||||||| |||||| ||| ||||||||| |||||||||||||| || |||||| ||||||||| | |||||||||||||    
T  26100125 atttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaata 26100224  T
Q  129 gaatcaat 136  Q
    ||| ||||    
T  26100225 gaaccaat 26100232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 32927998 - 32927892
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||||||||||| |||||||| |||||| ||| ||||||||| |||||||||| |||  |  ||||| ||||||||| | |||||||||| ||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagta 32927899  T
Q  129 gaatcaa 135  Q
    |||||||    
T  32927898 gaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 13384652 - 13384740
Alignment:
Q  49 aatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    ||||||||| |||||| ||| ||||||||| |||| |||||||||  | |||||| ||||||||| || ||||||||||||||||||||    
T  13384652 aatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaat 13384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 35495397 - 35495259
Alignment:
Q  3 tgtatgtttggttttgcagtga-gaaaa---atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-g 97  Q
    ||||||||||||| ||| |||| |||||   ||||||||||||||||||| |  ||||| ||| || |||||||||||||||| ||||||||||| || |    
T  35495397 tgtatgtttggttctgctgtgacgaaaattgatttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatag 35495298  T
Q  98 aatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||||| ||| |   | ||||||||| ||||||||||    
T  35495297 aatcagaatctagatagtgtagcttcaagtagaatcaat 35495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 2924881 - 2924822
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||||||||  |||||||| |||||| | ||||| ||||||||||||||||||    
T  2924881 ttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaatca 2924822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 16972043 - 16972149
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||| ||||||| |||||||| ||| || ||||||||||||| || |||||||||||  |  ||| | || |||||| |||||||||||||||    
T  16972043 atttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaata 16972142  T
Q  129 gaatcaa 135  Q
     ||||||    
T  16972143 caatcaa 16972149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 32767495 - 32767436
Alignment:
Q  30 atttatgtttggatacattaatgt--aaaactgagttaaacaataaatttgagtgtaaaa 87  Q
    ||||||||||||||||||| ||||  |||| |||||| |||||||||||| |||||||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaa 32767436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 42982643 - 42982544
Alignment:
Q  37 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaa 135  Q
    |||||||||||| |||||||| ||||||  | |||||||||| ||||||||||||||  | |||||| |||||||||||||||||||||| |||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 1976845 - 1976901
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaa 88  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  1976845 ttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaa 1976901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 44439360 - 44439264
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    |||||||||||||||  || |||||||| |||||| |||||||||||||||||| |||||||||  | |||||| ||||| ||| || |||||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaa 44439264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 4894136 - 4894243
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||||||||| |||||||| || ||||| ||| || || ||||||||||||| ||| ||||||| || |||||| ||||||| |||||||| ||||| |     
T  4894136 atttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaagctacgatttctagtttcaagtt 4894235  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  4894236 gaatcaat 4894243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 42741082 - 42740976
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    |||| |||||| |||||||| ||||||| ||||||  ||| |||||||||||||||||||||||  | |||||| ||||||||| |  ||||||||| ||    
T  42741082 atttgtgtttgaatacatta-tgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagta 42740984  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  42740983 gaatcaat 42740976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 10618955 - 10619027
Alignment:
Q  65 aaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||| |||||||||||| ||||||||| || |||||| |||||  ||||||||||||||| ||||||||||    
T  10618955 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaat 10619027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 37420196 - 37420283
Alignment:
Q  52 gtaaaactgagttaaacaataaatttgagtgtaaaaatcaa---taatgaatcagaagctacaatttctagcttcaaatagaatcaat 136  Q
    |||||| |||||| || ||||||||||||||||||||||||   ||  |||| |||||||||| ||||||| ||| | ||||||||||    
T  37420196 gtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctagagaattagaagctacattttctagattctagtagaatcaat 37420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 38192070 - 38191998
Alignment:
Q  210 tgattttgttgaagctctgaagtatagtgtttgcca-aatcgtggtggctcattgtgattctgccaatctcac 281  Q
    |||||||||||||||| |||||| |||| ||||||| ||||||||||| |  |||| |||||| |||||||||    
T  38192070 tgattttgttgaagctttgaagtgtagtttttgccagaatcgtggtggtttgttgtaattctgtcaatctcac 38191998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 7629797 - 7629750
Alignment:
Q  127 tagaatcaatcatgactacttcaaaagtggaaccaaacatacactaaa 174  Q
    ||||||||||| || || || |||||||||||||||||||||||||||    
T  7629797 tagaatcaatcttggctcctccaaaagtggaaccaaacatacactaaa 7629750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 7632874 - 7632815
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatc 90  Q
    |||| ||||||||||||   ||||||| |||||| ||||||||| |||||||||||||||    
T  7632874 tttacgtttggatacatatttgtaaaagtgagttgaacaataaacttgagtgtaaaaatc 7632815  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatt 76  Q
    ||||||||||||||||||| |||| ||| |||||| |||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 40401621 - 40401671
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttga 79  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||| ||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaacttga 40401671  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 16518884 - 16518827
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaa 87  Q
    |||| |||||||||||||| |||||||| |||||| ||| ||||||||| | ||||||    
T  16518884 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaa 16518827  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 33961980 - 33962053
Alignment:
Q  50 atgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagctt 122  Q
    |||||||| ||| || |||||||||||||||| ||||||||||| || |||||| || || ||||||| |||||    
T  33961980 atgtaaaaatgacttgaacaataaatttgagtctaaaaatcaattatagaatcaaaaactccaatttcaagctt 33962053  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 488605 - 488565
Alignment:
Q  95 atgaatcagaagctacaatttctagcttcaaatagaatcaa 135  Q
    |||||| ||||||||||||||||||| |||| |||||||||    
T  488605 atgaattagaagctacaatttctagcctcaagtagaatcaa 488565  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 3654743 - 3654787
Alignment:
Q  127 tagaatcaatcatgactacttcaaaagtggaaccaaacatacact 171  Q
    |||||||||| ||| || || ||||||||||||||||||||||||    
T  3654743 tagaatcaattatgcctcctccaaaagtggaaccaaacatacact 3654787  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 41494088 - 41494136
Alignment:
Q  68 caataaatttgagtgtaaaaatcaataat-gaatcagaagctacaattt 115  Q
    |||||||||| ||||||||||||||| ||  ||||||||||||||||||    
T  41494088 caataaatttaagtgtaaaaatcaattataaaatcagaagctacaattt 41494136  T

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Target: scaffold0361 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 14093 - 14199
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||||||||||| |||| ||| |||||| || |||||||||||||||||||||||||  | |||||| ||||||  ||| |||||||||| ||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatcataagcta-gattgctagcttcaagta 14191  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  14192 gaatcaat 14199  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 24306108 - 24306171
Alignment:
Q  63 ttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||||    
T  24306108 ttaaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24306171  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 24367208 - 24367145
Alignment:
Q  63 ttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaa 125  Q
    ||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||||    
T  24367208 ttaaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24367145  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 36640042 - 36639939
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaatag 129  Q
    ||||||||| ||||  || |||||||| |||| | |||| |||||||||||||||||| ||||  | |||| ||||||||||||||| |||||||| |||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagtag 36639943  T
Q  130 aatc 133  Q
    ||||    
T  36639942 aatc 36639939  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 15368579 - 15368489
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctag 119  Q
    ||||||||||| ||||||  |||||||| ||| || ||||| | ||||||||||||| |||||| || |||||||||||||||| ||||||    
T  15368579 atttatgtttgaatacatccatgtaaaagtgacttgaacaacatatttgagtgtaaagatcaattatagaatcagaagctacaacttctag 15368489  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10898825 - 10898764
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||||||||  || |||||||| |||||| ||||||||||||| ||||||||||||||    
T  10898825 tttatgtttggatag-ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaat 10898764  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 35439221 - 35439171
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagt 81  Q
    |||||||||||||||||||| |||||| |||||| |||||||||| |||||    
T  35439221 tttatgtttggatacattaacgtaaaaatgagttgaacaataaatgtgagt 35439171  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 37877163 - 37877105
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaat 89  Q
    ||||||||||||| |||| || ||||| ||||||||||||||||||||||  |||||||    
T  37877163 tttatgtttggattcattcatataaaagtgagttaaacaataaatttgaggctaaaaat 37877105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 4306618 - 4306561
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaa 87  Q
    ||||||||||||||||||| ||||||||  || || |||||||||||| |||||||||    
T  4306618 atttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 4306561  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 35073416 - 35073480
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||||||||  ||||||| || ||||| ||||||||||  ||||||||||||| |||||||||    
T  35073416 aatttatgtttttatacatttatataaaagtgagttaaactttaaatttgagtgtcaaaatcaat 35073480  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 43012410 - 43012469
Alignment:
Q  31 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||||||  ||| ||||||| |||| | ||||||||||||||||||||||||||    
T  43012410 tttatgtttggatatttta-tgtaaaaatgaggtcaacaataaatttgagtgtaaaaatca 43012469  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 117479 - 117526
Alignment:
Q  34 atgtttggatacattaatgtaaaactgagttaaacaataaatttgagt 81  Q
    ||||||||||||||  |||||||| |||||||||||||| ||||||||    
T  117479 atgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 117526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 8591587 - 8591524
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    |||||| ||||||||||||  | ||||| |||||| ||||| ||||||||||| ||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaat 8591524  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 37886019 - 37886078
Alignment:
Q  32 ttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||| |||||||  ||||||| |||||| |||||||||||| | |||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatttcaatgtaaaaatca 37886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 9184965 - 9185057
Alignment:
Q  3 tgtatgtttggttttgcagtgagaaaa--atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||||||||||||  || ||||  ||||||||||| ||||| | ||||| || |||||| ||| |||||||| | ||| |||||||||    
T  9184965 tgtatgtttggttttgcatagataaaatgatttatgtttgaatacacttatgtagaagtgagttgaacgataaatttaaatgttaaaatcaat 9185057  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 7925463 - 7925431
Alignment:
Q  59 tgagttaaacaataaatttgagtgtaaaaatca 91  Q
    |||||| ||||||||||||||||||||||||||    
T  7925463 tgagttgaacaataaatttgagtgtaaaaatca 7925431  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 29923319 - 29923287
Alignment:
Q  59 tgagttaaacaataaatttgagtgtaaaaatca 91  Q
    ||||||||||| |||||||||||||||||||||    
T  29923319 tgagttaaacattaaatttgagtgtaaaaatca 29923287  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 17239 - 17132
Alignment:
Q  30 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaataat-gaatcagaagctacaatttctagcttcaaata 128  Q
    ||||||||||| ||||||||||| |||   ||||| || ||||||| | |||||||||||| ||  | |||||||||||||| ||||||||   ||| ||    
T  17239 atttatgtttgaatacattaatgaaaacgggagttgaataataaatctcagtgtaaaaatctattttagaatcagaagctacgatttctagacacaagta 17140  T
Q  129 gaatcaat 136  Q
    ||||||||    
T  17139 gaatcaat 17132  T

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Target: scaffold0636 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 7747 - 7811
Alignment:
Q  29 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 93  Q
    ||||||||||||||||||||  |||| || | ||||| ||||||| ||||| ||| |||||||||    
T  7747 aatttatgtttggatacattcgtgtataattaagttatacaataattttgaatgttaaaatcaat 7811  T

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