View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11730_low_4 (Length: 353)
Name: NF11730_low_4
Description: NF11730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11730_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 30853746 - 30853412
Alignment:
| Q |
1 |
ataccatccaagttcttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaaagtgaagaa---tgtatggaatggctaaatgata |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30853746 |
ataccatccaagttcttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaaagtgaagaagaatgtatggaatggctaaatgata |
30853647 |
T |
|
| Q |
98 |
agccaaaaggatcagttgtttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30853646 |
agccaaaaggatcagttgtttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaag |
30853547 |
T |
|
| Q |
198 |
ttacttcttatgggttgttaaaccatccgaagagccgaaactccgaaaagattttgnnnnnnngacacaaaaagggtttgttgtaacatggtgctcccaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30853546 |
ttacttcttatgggttgttaaaccatccgaagagccgaaactccgaaaagattttgaaaaaaagacacaaaaagggtttgttgtaacatggtgctcccaa |
30853447 |
T |
|
| Q |
298 |
ttaaaagttctagcacatgaatctatagggtgttt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30853446 |
ttaaaagttctagcacatgaatctatagggtgttt |
30853412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30845270 - 30845015
Alignment:
| Q |
1 |
ataccatccaagttcttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaaagt---gaagaatgtatggaatggctaaatgata |
97 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| | ||||||||||| || || |||||||| | | | ||| |||| ||||||||| ||||||||| |
|
|
| T |
30845270 |
ataccatcaaagttcttagacaagagacttaaagacgatgaagattacggcgctgcacaattcaagactaatgaaaaatgcatggaatggttaaatgata |
30845171 |
T |
|
| Q |
98 |
agccaaaaggatcagttgtttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaag |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||| | || |||| || ||| || | ||| |||||| || ||||| |||| ||| ||| |
|
|
| T |
30845170 |
agccaaaaggatcagttgtttatgtttcttttggaagtatggtaagtcttgatgaggagcaaatacaagaattagcttatggtttaagagatagtggaag |
30845071 |
T |
|
| Q |
198 |
ttacttcttatgggttgttaaaccatccgaagagccgaaactccgaaaagattttg |
253 |
Q |
| |
|
|||||||||||||||||||| | | || |||||| | || |||| ||||||||||| |
|
|
| T |
30845070 |
ttacttcttatgggttgttagagcttctgaagagactaagctcccaaaagattttg |
30845015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 30817539 - 30817302
Alignment:
| Q |
16 |
ttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaaagtgaagaatgtatggaatggctaaatgataagccaaaaggatcagttg |
115 |
Q |
| |
|
||||| |||||| ||||| ||||||||||| || || ||||||| |||| || ||| |||| |||||||||||| ||||||||||| | || | || |
|
|
| T |
30817539 |
ttagataagcgagttaaagatgatgaagatcatagtattgcacaattaaaaagcgacgaaagtatagaatggctaaataataagccaaaaaggtctgctg |
30817440 |
T |
|
| Q |
116 |
tttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaagttacttcttatgggttgt |
215 |
Q |
| |
|
|||||| ||| ||||| ||| |||||||||||||||| |||||| ||||||||||||| | ||| | |||||||| |||||||||||||||||| || |
|
|
| T |
30817439 |
tttatgtttcatttgggagtatggcatcactcaatgaggaacaaatagaggaagtagcacattgtttgaaagattgtggaagttacttcttatgggtagt |
30817340 |
T |
|
| Q |
216 |
taaaccatccgaagagccgaaactccgaaaagattttg |
253 |
Q |
| |
|
||| |||| |||||| | || |||| |||||| |||| |
|
|
| T |
30817339 |
gaaaacatctgaagagactaagctcccaaaagactttg |
30817302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30840761 - 30840542
Alignment:
| Q |
1 |
ataccatccaagttcttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaa---agtgaagaatgtatggaatggctaaatgata |
97 |
Q |
| |
|
|||||||| | |||||||||||| || |||| | |||||||||||||||| |||||||| | | |||| |||| |||||||||||||| |||| |
|
|
| T |
30840761 |
ataccatcaatgttcttagacaatagacataaagacgatgaagattatggtgttgcacaattcaagtataatgaaaaatgcatggaatggctaaacgata |
30840662 |
T |
|
| Q |
98 |
agccaaaaggatcagttgtttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaag |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||| | || |||| || ||| || | ||| |||||| || ||||| |||| ||| ||| |
|
|
| T |
30840661 |
agccaaaaggatcagttgtttatgtttcttttggaagtatggtaagtcttgatgaggagcaaatacaagaattagcttatggtttaagagatagtggaag |
30840562 |
T |
|
| Q |
198 |
ttacttcttatgggttgtta |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30840561 |
ttacttcttatgggttgtta |
30840542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 30859003 - 30858809
Alignment:
| Q |
16 |
ttagacaagcgaattaaaaatgatgaagattatggtgcaacacaattccaaagtgaagaatgtatggaatggctaaatgataagccaaaaggatcagttg |
115 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||| |||| || ||||||| |||||| | || ||||||||| ||||||||||| | || |||| |
|
|
| T |
30859003 |
ttagataagcaaattaaagatgatgaagattatggtgttgcacagttaaaaagtgatgaatgtctagattggctaaataataagccaaaaaggtctgttg |
30858904 |
T |
|
| Q |
116 |
tttatgcttcttttggtagtttggcatcactcaatgaagaacaattagaggaagtagcttgtgctttaacagattgtgaaagttacttcttatgg |
210 |
Q |
| |
|
|||||| ||| ||||| ||| ||||| | |||| || |||||| || |||||||||| | | ||| | |||||||| ||||||||| |||||| |
|
|
| T |
30858903 |
tttatgtttcatttgggagtatggcaagagtcaaagaggaacaaataaaggaagtagcgtattgtttgaaagattgtggaagttactttttatgg |
30858809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 13688102 - 13688153
Alignment:
| Q |
83 |
aatggctaaatgataagccaaaaggatcagttgtttatgcttcttttggtag |
134 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| |
|
|
| T |
13688102 |
aatggctgaatgataagcctaaaggttcagttgtgtatgcttcatttggtag |
13688153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University