View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11731_high_11 (Length: 266)

Name: NF11731_high_11
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11731_high_11
NF11731_high_11
[»] chr4 (21 HSPs)
chr4 (48-173)||(41810163-41810303)
chr4 (98-176)||(32651257-32651335)
chr4 (110-175)||(38467710-38467775)
chr4 (1-53)||(41810345-41810397)
chr4 (112-163)||(3649873-3649924)
chr4 (59-97)||(14209422-14209460)
chr4 (59-97)||(14210373-14210411)
chr4 (59-97)||(14211342-14211380)
chr4 (59-97)||(14212293-14212331)
chr4 (59-97)||(14213262-14213300)
chr4 (59-97)||(14214230-14214268)
chr4 (59-97)||(14215199-14215237)
chr4 (59-97)||(14216168-14216206)
chr4 (59-97)||(14217119-14217157)
chr4 (59-97)||(14218070-14218108)
chr4 (59-97)||(14219040-14219078)
chr4 (59-97)||(14220009-14220047)
chr4 (59-97)||(14220960-14220998)
chr4 (59-97)||(14221929-14221967)
chr4 (59-97)||(14222898-14222936)
chr4 (131-164)||(26720238-26720271)
[»] chr3 (9 HSPs)
chr3 (48-171)||(52130783-52130921)
chr3 (128-175)||(11394008-11394055)
chr3 (111-170)||(19766009-19766068)
chr3 (57-97)||(12812858-12812898)
chr3 (128-164)||(46233980-46234016)
chr3 (1-41)||(52130955-52130995)
chr3 (48-96)||(53689322-53689370)
chr3 (57-96)||(52311606-52311645)
chr3 (57-93)||(14459220-14459256)
[»] chr7 (5 HSPs)
chr7 (172-245)||(10220169-10220245)
chr7 (98-152)||(7841300-7841354)
chr7 (110-164)||(21820173-21820227)
chr7 (57-97)||(1971172-1971212)
chr7 (128-170)||(16262699-16262741)
[»] chr1 (10 HSPs)
chr1 (98-176)||(17726022-17726099)
chr1 (1-53)||(31770918-31770970)
chr1 (98-164)||(22368186-22368252)
chr1 (1-53)||(7607930-7607982)
chr1 (98-158)||(14184692-14184752)
chr1 (128-164)||(32440666-32440702)
chr1 (131-164)||(31771394-31771427)
chr1 (128-164)||(1721557-1721593)
chr1 (61-97)||(40981550-40981586)
chr1 (57-97)||(50290513-50290553)
[»] chr6 (2 HSPs)
chr6 (110-175)||(31444761-31444826)
chr6 (112-171)||(33054164-33054223)
[»] chr8 (3 HSPs)
chr8 (100-164)||(44663672-44663736)
chr8 (110-164)||(35348992-35349046)
chr8 (107-148)||(19962047-19962088)
[»] chr2 (6 HSPs)
chr2 (100-164)||(4453779-4453843)
chr2 (128-170)||(7161811-7161853)
chr2 (128-175)||(997810-997857)
chr2 (59-97)||(31409658-31409696)
chr2 (128-164)||(9208571-9208607)
chr2 (128-164)||(3625182-3625218)
[»] scaffold0014 (1 HSPs)
scaffold0014 (131-172)||(32608-32649)
[»] scaffold0152 (1 HSPs)
scaffold0152 (110-164)||(10196-10250)
[»] scaffold0003 (1 HSPs)
scaffold0003 (110-164)||(37007-37061)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 41810303 - 41810163
Alignment:
Q  48 atcagtggttgatgtgctaacctcccctacttacaatgatctaacggtct---------------taaaaatcttaaaattagggttttaaatggtaatt 132  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||               |||||||||||||||||||||||||| ||||||||    
T  41810303 atcaatggttgatatgctaaccgcccctacttacaatgatctaacggtctggattgattggcgcttaaaaatcttaaaattagggttttaagtggtaatt 41810204  T
Q  133 ggagtgttaactaggattagaaataagttagagtagattag 173  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  41810203 ggagtgttaactaggattagaaataagttagattagattag 41810163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 32651257 - 32651335
Alignment:
Q  98 taaaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagattagatg 176  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  32651257 taaaaatcttagaattagggttttaagtgataattggagtgttaactaggattaggaataagttagattagattagatg 32651335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 38467710 - 38467775
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagattagat 175  Q
    |||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  38467710 aattagggttttaagtgttaattggagtgttaactaggattataaataagttagattagattagat 38467775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41810397 - 41810345
Alignment:
Q  1 agagtttgcatgggtattgaacaacaatggagaggtgtgataataacatcagt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41810397 agagtttgcatgggtattgaacaataatggagaggtgtgataataacatcagt 41810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 3649924 - 3649873
Alignment:
Q  112 ttagggttttaaatggtaattggagtgttaactaggattagaaataagttag 163  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  3649924 ttagggttttaagtgttaattggagtgttaactaggattaggaataagttag 3649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14209422 - 14209460
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14209422 atgtgctaacctcccctaattacaatgatctaacggtct 14209460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14210373 - 14210411
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14210373 atgtgctaacctcccctaattacaatgatctaacggtct 14210411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14211342 - 14211380
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14211342 atgtgctaacctcccctaattacaatgatctaacggtct 14211380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14212293 - 14212331
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14212293 atgtgctaacctcccctaattacaatgatctaacggtct 14212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14213262 - 14213300
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14213262 atgtgctaacctcccctaattacaatgatctaacggtct 14213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14214230 - 14214268
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14214230 atgtgctaacctcccctaattacaatgatctaacggtct 14214268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14215199 - 14215237
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14215199 atgtgctaacctcccctaattacaatgatctaacggtct 14215237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14216168 - 14216206
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14216168 atgtgctaacctcccctaattacaatgatctaacggtct 14216206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14217119 - 14217157
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14217119 atgtgctaacctcccctaattacaatgatctaacggtct 14217157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14218070 - 14218108
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14218070 atgtgctaacctcccctaattacaatgatctaacggtct 14218108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14219040 - 14219078
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14219040 atgtgctaacctcccctaattacaatgatctaacggtct 14219078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14220009 - 14220047
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14220009 atgtgctaacctcccctaattacaatgatctaacggtct 14220047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14220960 - 14220998
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14220960 atgtgctaacctcccctaattacaatgatctaacggtct 14220998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14221929 - 14221967
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  14221929 atgtgctaacctcccctaattaaaatgatctaacggtct 14221967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 14222898 - 14222936
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  14222898 atgtgctaacctcccctaattacaatgatctaatggtct 14222936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 26720271 - 26720238
Alignment:
Q  131 ttggagtgttaactaggattagaaataagttaga 164  Q
    |||||||||||||||||||||| |||||||||||    
T  26720271 ttggagtgttaactaggattaggaataagttaga 26720238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 52130921 - 52130783
Alignment:
Q  48 atcagtggttgatgtgctaacctcccctacttacaatgatctaacggtct---------------taaaaatcttaaaattagggttttaaatggtaatt 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||               ||||||||||| |||||||||||||| ||||||||    
T  52130921 atcaatggttgatgtgctaacctcccctacttacaatgatctaacggtctggattgattggcgcctaaaaatcttagaattagggttttaagtggtaatt 52130822  T
Q  133 ggagtgttaactaggattagaaataagttagagtagatt 171  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  52130821 ggagtgttacctaggattagaaataagttagactagatt 52130783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 11394055 - 11394008
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttagagtagattagat 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11394055 taattggagtgttaactaggattagaaataagttagattagattagat 11394008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 19766068 - 19766009
Alignment:
Q  111 attagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagat 170  Q
    ||||||||||  | || ||||||||||||||||||||||||||||||||||||| |||||    
T  19766068 attagggtttggagtgttaattggagtgttaactaggattagaaataagttagattagat 19766009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 12812858 - 12812898
Alignment:
Q  57 tgatgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12812858 tgatgtgctaacctcccctaattacaatgatctaacggtct 12812898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 46233980 - 46234016
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  46233980 taattggagtgttaactaggattaggaataagttaga 46234016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52130995 - 52130955
Alignment:
Q  1 agagtttgcatgggtattgaacaacaatggagaggtgtgat 41  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52130995 agagtttgcatcggtattgaacaataatggagaggtgtgat 52130955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 53689370 - 53689322
Alignment:
Q  48 atcagtggttgatgtgctaacctcccctacttacaatgatctaacggtc 96  Q
    |||| ||| ||||||||||||||||| || |||||||||||||||||||    
T  53689370 atcaatggctgatgtgctaacctcccttaattacaatgatctaacggtc 53689322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 52311606 - 52311645
Alignment:
Q  57 tgatgtgctaacctcccctacttacaatgatctaacggtc 96  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  52311606 tgatgtgctaacctcccctaattacaatcatctaacggtc 52311645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 14459220 - 14459256
Alignment:
Q  57 tgatgtgctaacctcccctacttacaatgatctaacg 93  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  14459220 tgatgtgctaacctcccctagttataatgatctaacg 14459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 10220245 - 10220169
Alignment:
Q  172 agatggatttgtattctctaaattccaaaagttagtaaaagaat---ttttattatagtgatagtgattacattaaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  10220245 agatggatttgtattctctaaattccaaaagttagtaaaagaattttttttattatagtgatagtgattacattaaa 10220169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 7841354 - 7841300
Alignment:
Q  98 taaaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattag 152  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  7841354 taaaaatcttagaattagggttttaagtggtaattagagtgttaactaggattag 7841300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 21820173 - 21820227
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    ||||| |||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  21820173 aattatggttttaagtgttaattggagtgttaattaggattaggaataagttaga 21820227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 1971212 - 1971172
Alignment:
Q  57 tgatgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  1971212 tgatgtgctaacctcccctaattataatgatctaacggtct 1971172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 16262699 - 16262741
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttagagtagat 170  Q
    |||||| |||||||||||||||||| ||||||||||| |||||    
T  16262699 taattgaagtgttaactaggattaggaataagttagattagat 16262741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 17726099 - 17726022
Alignment:
Q  98 taaaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagattagatg 176  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  17726099 taaaaatcttagaattagggttttaagtgataattggagtgttaactaggattaggaataa-ttagattagattagatg 17726022  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31770918 - 31770970
Alignment:
Q  1 agagtttgcatgggtattgaacaacaatggagaggtgtgataataacatcagt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31770918 agagtttgcatgggtattgaacaataatggagaggtgtgataataacatcagt 31770970  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 22368186 - 22368252
Alignment:
Q  98 taaaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||| |||||||||||||| || |||||| |||||||||||||||||| |||||||||||    
T  22368186 taaaaatcttagaattagggttttaagtgataattgaagtgttaactaggattaggaataagttaga 22368252  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7607930 - 7607982
Alignment:
Q  1 agagtttgcatgggtattgaacaacaatggagaggtgtgataataacatcagt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  7607930 agagtttgcatgggtattgaacaataatggagaggtgtgataataacagcagt 7607982  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 14184752 - 14184692
Alignment:
Q  98 taaaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataa 158  Q
    ||||||||||| |||||| ||||||| |||||||| ||||||||||||  |||||||||||    
T  14184752 taaaaatcttagaattagagttttaagtggtaattagagtgttaactataattagaaataa 14184692  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 32440666 - 32440702
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32440666 taattggagtgttaactaggattaggaataagttaga 32440702  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 31771394 - 31771427
Alignment:
Q  131 ttggagtgttaactaggattagaaataagttaga 164  Q
    |||||||||||||||||||||| |||||||||||    
T  31771394 ttggagtgttaactaggattaggaataagttaga 31771427  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 1721593 - 1721557
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  1721593 taattggagtgttaattaggattaggaataagttaga 1721557  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 40981550 - 40981586
Alignment:
Q  61 gtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  40981550 gtgctaacctcctctaattacaatgatctaacggtct 40981586  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 50290553 - 50290513
Alignment:
Q  57 tgatgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  50290553 tgatgtgctaacctcctctaattataatgatctaacggtct 50290513  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 31444826 - 31444761
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagattagat 175  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  31444826 aattagggttttaagtagtaattggagtgttaactaggattaggaataagttagattagattagat 31444761  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 33054164 - 33054223
Alignment:
Q  112 ttagggttttaaatggtaattggagtgttaactaggattagaaataagttagagtagatt 171  Q
    |||||||||||| || |||||| |||||||| ||||||||| ||||||||||| ||||||    
T  33054164 ttagggttttaagtgttaattgtagtgttaattaggattaggaataagttagattagatt 33054223  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 44663672 - 44663736
Alignment:
Q  100 aaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  44663672 aaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttaga 44663736  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 35349046 - 35348992
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  35349046 aattaggattttaagtgttaattggagtgttaactaggattagaaataagttaga 35348992  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 19962088 - 19962047
Alignment:
Q  107 taaaattagggttttaaatggtaattggagtgttaactagga 148  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  19962088 taaaattagggttttaagtgttaatttgagtgttaactagga 19962047  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 4453843 - 4453779
Alignment:
Q  100 aaaatcttaaaattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  4453843 aaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttaga 4453779  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 7161853 - 7161811
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttagagtagat 170  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  7161853 taattggagtgttaactaggattagaaataagttagattagat 7161811  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 997857 - 997810
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttagagtagattagat 175  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  997857 taattgaagtgttaactaggattaggaataagttagattagattagat 997810  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 31409658 - 31409696
Alignment:
Q  59 atgtgctaacctcccctacttacaatgatctaacggtct 97  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  31409658 atgtgctaacctcccctaattacaatgatctaacggtct 31409696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 9208607 - 9208571
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9208607 taattggagtgttaactaggattaggaataagttaga 9208571  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 3625218 - 3625182
Alignment:
Q  128 taattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  3625218 taattggagtgttaattaggattaggaataagttaga 3625182  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 32649 - 32608
Alignment:
Q  131 ttggagtgttaactaggattagaaataagttagagtagatta 172  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  32649 ttggagtgttaactaggattagaaataagttagattagatta 32608  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 10250 - 10196
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    |||||||||||  | || ||||||||||||||||||||||| | |||||||||||    
T  10250 aattagggtttggagtgttaattggagtgttaactaggattgggaataagttaga 10196  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 37007 - 37061
Alignment:
Q  110 aattagggttttaaatggtaattggagtgttaactaggattagaaataagttaga 164  Q
    ||||||| ||| || || ||||||||||||||| ||||||||| |||||||||||    
T  37007 aattaggatttgaagtgttaattggagtgttaattaggattaggaataagttaga 37061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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