View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_high_2 (Length: 552)
Name: NF11731_high_2
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 27838830 - 27838293
Alignment:
| Q |
1 |
cttttatttggaagaccttagcgcttctgttgaaatcaacttaactgatgctatatccttttatgctttgataaaaatcattttattttgtactaagaac |
100 |
Q |
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| T |
27838830 |
cttttatttggaagaccttagcgcttctgttgaaatcaacttaactgatgctatatccttttatgctttgataaaaatcattttattttgtactaagaac |
27838731 |
T |
|
| Q |
101 |
tccataatctttttaaatgttttattacacagttcttgttgaggataaaacaataataaacaagtgtttaaataatgtttgcttcagccaattaaatgta |
200 |
Q |
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| T |
27838730 |
tccataatctttttaaatgttttattacacagttcttgttgaggataaaacaataataaacaagtgtttaaataatgtttgcttcagccaattaaatgta |
27838631 |
T |
|
| Q |
201 |
ctcctttaaatgtcattatgatatatagttacctcttttagcattccnnnnnnngtgtgcctgaaatgtaccaagtcagggatggtaggattaggttgca |
300 |
Q |
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| T |
27838630 |
ctcctttaaatgtcattatgatatatagttacctcttttagcattcctttttttgtgtgcctgaaatgtaccaagtcaggcatggtaggattaggttgca |
27838531 |
T |
|
| Q |
301 |
tcttgttagttcatgccatgttatgttagtatgaagtattttcattaggattaggttgcatctaattgattaaaggattctgtacacagtgcatacaaag |
400 |
Q |
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| T |
27838530 |
tcttgttagttcatgccatgttatgttagtatgaagtattttcattaggattaggttgcatctaattgattaaaggattctgtacacagtgcatacaaag |
27838431 |
T |
|
| Q |
401 |
tgcttagagcacatttgttctgtcttttcataattttcattaatgtgcctgctataactcttataacagttcaagtttattgtaagcatgaagtattgtc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27838430 |
tgcttagagcacatttgttctgtcttttcataattttcattaatgtgtctgctataactcttataacagttcaagtttattgtaagcatgaagtattgtc |
27838331 |
T |
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| Q |
501 |
attagtttctttgactatccatacaagattaccacagg |
538 |
Q |
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| T |
27838330 |
attagtttctttgactatccatacaagattaccacagg |
27838293 |
T |
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