View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_high_6 (Length: 367)
Name: NF11731_high_6
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 41537423 - 41537072
Alignment:
| Q |
1 |
cttgacaaggcacgctatttgagaaaatttacattgagtggaatggatggtatgatgcaattagaaactctagaaatagcaactgaagtaatgtttaaca |
100 |
Q |
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| T |
41537423 |
cttgacaaggcacgctatttgagaaaatttacattgagaggaatggatggtatgatgcaattagaaactctagaaatagcaactgaagtaatgtttaaca |
41537324 |
T |
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| Q |
101 |
ttcgatagannnnnnnaaagacatttgatagctgatatataaagtttcaatcagttgtaatttgttattataacaaccgtcaatttaccagacatggact |
200 |
Q |
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| T |
41537323 |
ttcgatagatttttttaaagacatttgatagctgacatataaagttccaatcagttgtaatttgttattataacaaccgtcaatttaccagacatggact |
41537224 |
T |
|
| Q |
201 |
tagattatgctgaggtcaacatcactgtggaggtattgtgtccgaccaatgctgagcattctgatatcctgtcgaactctggtacgttaaagttgtatgc |
300 |
Q |
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| T |
41537223 |
tagattatgctgaggtcaacaccactgtggaggtattgtgtccgaccaatgctgagcattctgatatcccgtcgaactctggtacgttaaagttgtatgc |
41537124 |
T |
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| Q |
301 |
ttttaaagattgtatattgttctccagagttataaacaactaagttactgtt |
352 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41537123 |
ttttaaagattgcatattgttctccagagttataaacaactaagttactgtt |
41537072 |
T |
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