View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_high_9 (Length: 284)
Name: NF11731_high_9
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 267
Target Start/End: Complemental strand, 27171511 - 27171383
Alignment:
| Q |
136 |
cataactaactatctaag-tttgtatattacaaagcagtaactatatataatcctaagactctccacttccacaacctccaccatgatgacttccaccat |
234 |
Q |
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| T |
27171511 |
cataactaactatctaaggtttgtatattacaaaccagtaactata----atcctaagactctccacttccacaacctccaccatgatgacttccaccat |
27171416 |
T |
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| Q |
235 |
ctccagctttaaagacttgcgcatcatcattct |
267 |
Q |
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| T |
27171415 |
ctctagctttaaagacttgcgcatcatcattct |
27171383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 27171586 - 27171541
Alignment:
| Q |
15 |
acatcgaacaacaaaacaaacaaaactctatagagtaatttgcgactt |
62 |
Q |
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| T |
27171586 |
acatcgaacaacataacaaacaaaactc--tagagtaatttgcgactt |
27171541 |
T |
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