View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_low_16 (Length: 227)
Name: NF11731_low_16
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50104047 - 50103821
Alignment:
| Q |
1 |
acagtaaatccaactccataaatatgcaagcatggagatcttaccaaaactgtaattaataggccttcgagtgcgacaagagcgtgtatttccagaagaa |
100 |
Q |
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| T |
50104047 |
acagtaaatccaactccataaatatgcaagcatggagatcttaccaaaactgtaattaataggccttcgagtgcgacaagagcgtgtatttccagaagaa |
50103948 |
T |
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| Q |
101 |
aaagagttctgaaaatcttttaagagcttatcctgtctctctttttgtttcattgctctttcttttttctgtataatttgaaagtaatattacactattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50103947 |
aaagagttctgaaaatcttttaagagcttatcctgtctctctttttgtttcattgctctttcttttttctgtataatttgaaagtaatattacactattt |
50103848 |
T |
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| Q |
201 |
aatattaaaaacaaataaagggtgttc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50103847 |
aatattaaaaacaaataaagggtgttc |
50103821 |
T |
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