View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_low_4 (Length: 482)
Name: NF11731_low_4
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 175 - 469
Target Start/End: Complemental strand, 7089339 - 7089045
Alignment:
| Q |
175 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
274 |
Q |
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| T |
7089339 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
7089240 |
T |
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| Q |
275 |
ttggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattat |
374 |
Q |
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| T |
7089239 |
ttggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattttttcatggttaatgcattat |
7089140 |
T |
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| Q |
375 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtct |
469 |
Q |
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| T |
7089139 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtct |
7089045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 7668849 - 7668391
Alignment:
| Q |
1 |
tttttgtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgg |
100 |
Q |
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| T |
7668849 |
tttttgtagtattctttttcatccttctgttttccagagtgaactttcaattcaatcgctaaactatcacattctctcctatttagtctttgaactacgg |
7668750 |
T |
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| Q |
101 |
aaatgtaacaaatagtctcttaactattctcaatctatgaagttagtagctaaattatctcttaacttagtgaattgtgttattgtatttgcagctcttt |
200 |
Q |
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| T |
7668749 |
aaatgtaataaatagtctataaactattctcgatctatgaagttagtctctaaactacc----atctttgtgaattgtgttattgtatttgcagctcttt |
7668654 |
T |
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| Q |
201 |
ctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatcattggttactgatgatttctctagagc |
300 |
Q |
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| T |
7668653 |
ctggtgat--gagcaaacttctcttggctgcaaagaagattagaagagcaacatgcacaaattttttaatatcattggtttctgatgatttctctagagc |
7668556 |
T |
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| Q |
301 |
taacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattattattctactgtttacttgatcattaa |
400 |
Q |
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| T |
7668555 |
taacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatctttt-aaggctaatgcattattattctagtgcttagttgatcattaa |
7668457 |
T |
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| Q |
401 |
gc-aatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgt |
465 |
Q |
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| T |
7668456 |
gcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccacatgt |
7668391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 7089477 - 7089340
Alignment:
| Q |
1 |
tttttgtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgg |
100 |
Q |
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| T |
7089477 |
tttttgtagtattctttttcatctttctgttttccagagtaaacttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgg |
7089378 |
T |
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| Q |
101 |
aaatgtaacaaatagtctcttaactattctcaatctat |
138 |
Q |
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| T |
7089377 |
aaatgtaacaaatagtctcttaactattctcaatctat |
7089340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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