View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_low_5 (Length: 370)
Name: NF11731_low_5
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 7089454 - 7089811
Alignment:
| Q |
13 |
agatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacatacttcatttgattcaaagagaagtcttagtattatt |
112 |
Q |
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| T |
7089454 |
agatgaaaaagaatactacaaaaaaaagcctaaaagaaggtaattcaagttttaacaactacatacttcatttgattcaaagagaagtcttagtattatt |
7089553 |
T |
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| Q |
113 |
ttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagatataaactatatgta |
212 |
Q |
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| T |
7089554 |
ttaaaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagatataaactatatgta |
7089653 |
T |
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| Q |
213 |
gaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtacc |
312 |
Q |
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| T |
7089654 |
gaagtagccctttccctcttaataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtacc |
7089753 |
T |
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| Q |
313 |
ttacaccatgtgcttccaagcttaaaacaaaaatgacatcaaatcaaatacataaata |
370 |
Q |
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| T |
7089754 |
ttacaccatgtgcttccaagcttaaaacaaaaatgacatcaaatcaaatacataaata |
7089811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 75 - 368
Target Start/End: Original strand, 7669346 - 7669639
Alignment:
| Q |
75 |
atacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaa |
174 |
Q |
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| T |
7669346 |
atacttaatttgattcaaagagaaaccttggtgtgattttagaaaaatccaaacaaaattttgttatcaaatagagaataatttcatgtgagcacaacaa |
7669445 |
T |
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| Q |
175 |
tcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaa |
274 |
Q |
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| T |
7669446 |
tcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaa |
7669545 |
T |
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| Q |
275 |
aacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagcttaaaacaaaaatgacatcaaatcaaatacataaa |
368 |
Q |
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| T |
7669546 |
aacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagcttgaaacaaaaatgtcatcaaattaaatacataaa |
7669639 |
T |
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