View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11731_low_9 (Length: 308)
Name: NF11731_low_9
Description: NF11731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11731_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 41537835 - 41538078
Alignment:
| Q |
65 |
accttttgatagaatttcgagcagcagaggtttgaagcatcctttttattttgaaaggtgttctttgagctgtttaagacttgatttgttttgcatccaa |
164 |
Q |
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| T |
41537835 |
accttttgatagaatttcgagcagcagaggtttgaagcatcctttttattttgaaaggtgttctttgagctgtttaagacttgatttgttttgcatccaa |
41537934 |
T |
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| Q |
165 |
tgctagtttagcaatgcaatttatagtagccaacatgctagcagtgtagttggataagcatttaagtctctaattcctataggctgtgtaggacctaatg |
264 |
Q |
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| T |
41537935 |
tgctagtttagcaatgcaatttatagtagccaacatgctagcagtgtagttggataagcatttaagtctctaattcctataggctgtgtaggacctaatg |
41538034 |
T |
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| Q |
265 |
ctttgtaggcagacaactctaaccaactataatagattatcaca |
308 |
Q |
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| T |
41538035 |
ctttgtaggcagacaactctaaccaactataatagattatcaca |
41538078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41538079 - 41538148
Alignment:
| Q |
1 |
tggctcaacacaaaagtaattaattaatatatctgacaactactcctctctttaactatcctcaaccttt |
70 |
Q |
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| T |
41538079 |
tggctcaacacaaaagtaattaattaatatatctgacaactactcctctctttaactatcctcaaccttt |
41538148 |
T |
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