View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_11 (Length: 485)
Name: NF11732_high_11
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_11 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 33721002 - 33721326
Alignment:
| Q |
11 |
cagagatatagtgtaatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtata |
110 |
Q |
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| T |
33721002 |
cagagatatagtgtaatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtata |
33721101 |
T |
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| Q |
111 |
tggagtagcaatctttgataaattaatagaattatgataggaatcattgttttgggagtttttatacgacaaaaatcggagcatgaatgtataaaatcgg |
210 |
Q |
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| T |
33721102 |
tggagtagcaatctttgataaattaatagaattatgataggaatcattgctgtgggagtttttataagacaaaaatcggggcatgaatgtataaaatcgg |
33721201 |
T |
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| Q |
211 |
agcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggcttcgttct |
310 |
Q |
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| T |
33721202 |
agcacaatcttgtggataacggtcaattcctactgtgtacgaactgcaaatcggggcacgaaatttctcaggacatgaccactattcaaggcttcgttct |
33721301 |
T |
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| Q |
311 |
tcatgttttgaggtgacttccattc |
335 |
Q |
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| T |
33721302 |
tcatgttttgaggtgacttccattc |
33721326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 21219536 - 21219634
Alignment:
| Q |
68 |
tcctctaattagtgctatagattagcatagaaatgaaagtatatgga--gtagcaatctttgataaattaatagaattatgataggaatcattgttttg |
164 |
Q |
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| T |
21219536 |
tcctctaattattgctatagattagcctagaaatgaaaatgtatgctttgtagcaatctttgataaagtaatagaattatgataggaattattgttttg |
21219634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 344 - 462
Target Start/End: Complemental strand, 7462 - 7342
Alignment:
| Q |
344 |
tggcattggattcacttatgtctttgatcttt--ctttctttcaaatatgttgtttatctctttctttttccaaagcaccaggaccttacagtccaattt |
441 |
Q |
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| T |
7462 |
tggcattggattcacttgtgtctttgatatttttctttcttttaaatcttttgtttatctctttctttttccaaagcaccagaacctaacagtccaattt |
7363 |
T |
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| Q |
442 |
tgagaccaactcctattagtg |
462 |
Q |
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| T |
7362 |
ttagaccaattcctattagtg |
7342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 24944790 - 24944914
Alignment:
| Q |
205 |
aatcggagcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggctt |
304 |
Q |
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||||||||||| ||||||||||||| ||||||||| | |||||||| ||| || | ||||||| |||||| || ||| || | || |||||||||||| |
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| T |
24944790 |
aatcggagcacgattttgtggataaaggtcaattcgtactgtgtacaaacaacagttcggggcacaaaatttttcgggatataagcattattcaaggctt |
24944889 |
T |
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| Q |
305 |
cgttcttcatgttttgaggtgactt |
329 |
Q |
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| T |
24944890 |
cgctcttcatgttgtgaggtgactt |
24944914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 21657533 - 21657497
Alignment:
| Q |
119 |
caatctttgataaattaatagaattatgataggaatc |
155 |
Q |
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| T |
21657533 |
caatctttgataaaataatagaattgtgataggaatc |
21657497 |
T |
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