View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_19 (Length: 342)
Name: NF11732_high_19
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 51293044 - 51292716
Alignment:
| Q |
1 |
ctttgcattttacttttacctttgttgctaaacagaacatttctagagccaatatcttttgtgtaagttttctatttgacacgcaatgcctttatttaac |
100 |
Q |
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| T |
51293044 |
ctttgcattttacttttacctttgttgctaaacagagcatttctagagccaatatcttttgtgtaagttttctattttacacgcaatgcctttatttaac |
51292945 |
T |
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| Q |
101 |
gaaggtttgattatatttcatgggaatgaaaaaatgaaatgcaacagggtcccgtatttctatgttctttctcattttcaatcgaacaattgaaatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51292944 |
gaaggtttgattatatttcatgggaatgaaaaaatgaaatgcaacagggtcccgtatttctatgttctttctcattttcaatcgaacaattgaaatgttt |
51292845 |
T |
|
| Q |
201 |
tataaagaaaacttattattcgaataaaattcataatgtctattaataatatgcatgtaattaaggaaataatatttgcttgttgttgtagtccaacgaa |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51292844 |
tataaagaaaacttaatattcgaataaaattcataatgtctattaataatatgcatgtaattaaggaaataatatttgcttgttgttgtagtccaacgaa |
51292745 |
T |
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| Q |
301 |
agttgtgcacagccctatatcaattctct |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
51292744 |
agttgtgcacagccctatatcaattctct |
51292716 |
T |
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