View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_24 (Length: 307)
Name: NF11732_high_24
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
134 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
233 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
234 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
293 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5051536 - 5051458
Alignment:
| Q |
1 |
tgggctgaaaattcgaccttaaactcagcaatataacaagataaa-tcatccttatattcgagaattgttggattttca |
78 |
Q |
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| T |
5051536 |
tgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 51273883 - 51274120
Alignment:
| Q |
51 |
cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcctcacgaaagat |
150 |
Q |
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| T |
51273883 |
cttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagat |
51273982 |
T |
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| Q |
151 |
tggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaaccttattattttatagca |
250 |
Q |
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| T |
51273983 |
tggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactagaaggctttgtttgtgaacctta-----ttatagca |
51274076 |
T |
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| Q |
251 |
ttgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
293 |
Q |
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| T |
51274077 |
tcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 14907866 - 14908035
Alignment:
| Q |
7 |
gaaaattcgaccttaaactcagcaatataacaagataa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaac |
104 |
Q |
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| T |
14907866 |
gaaaattcgaccctaaactcgacaatataacaagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaac |
14907965 |
T |
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| Q |
105 |
catacatggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctcca |
174 |
Q |
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| T |
14907966 |
cacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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