View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11732_high_26 (Length: 287)
Name: NF11732_high_26
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 26721106 - 26721382
Alignment:
| Q |
1 |
ccatgttgttgttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26721106 |
ccatgttgttgttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagtt |
26721205 |
T |
|
| Q |
101 |
aggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgattgattttagttttcatccttttcaatttccaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721206 |
aggtctttaatttttattctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgattgattttagttttcatccttttcaatttccaa |
26721305 |
T |
|
| Q |
201 |
atgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26721306 |
atgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
26721382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 45117841 - 45117563
Alignment:
| Q |
1 |
ccatgttgttgttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgtt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45117841 |
ccatgttgttcttatgggttttggctgttttggtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagtt |
45117742 |
T |
|
| Q |
101 |
aggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgattga--ttttagttttcatccttttcaatttcc |
198 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45117741 |
aggtctttaatttttcttctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgattgagtttttagttttcatccttttcaatttcc |
45117642 |
T |
|
| Q |
199 |
aaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45117641 |
aaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
45117563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 2986224 - 2986501
Alignment:
| Q |
2 |
catgttgttgttatgggttttggctgttttagtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtattttgtta |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2986224 |
catgttgttcttatgggttttggctgttttggtgtataggcgattgtgttttggcctagcagcagtgccctgtttttgctgttcaaaaagtatttagtta |
2986323 |
T |
|
| Q |
102 |
ggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgattga--ttttagttttcatccttttcaatttcca |
199 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2986324 |
ggtctttaatttttcttctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgattgagtttttagttttcatccttttcaatttcca |
2986423 |
T |
|
| Q |
200 |
aatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtctgtg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2986424 |
aatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttattttgtgtgtg |
2986501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University