View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_high_29 (Length: 247)

Name: NF11732_high_29
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_high_29
NF11732_high_29
[»] chr8 (8 HSPs)
chr8 (9-247)||(2551115-2551353)
chr8 (14-221)||(2556730-2556937)
chr8 (13-218)||(2566555-2566760)
chr8 (25-205)||(2543658-2543838)
chr8 (22-218)||(2534211-2534407)
chr8 (11-205)||(1831833-1832027)
chr8 (11-205)||(1866276-1866470)
chr8 (82-143)||(2546828-2546889)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 2551115 - 2551353
Alignment:
Q  9 gagatgtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatca 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2551115 gagatgtgacatatcgaggatttaccggaacttcttatagtgatatagcaattgatttaaagtgtagttcttctggttgttttaagattctattagatca 2551214  T
Q  109 aaataacattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgccta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2551215 aaataacattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgccta 2551314  T
Q  209 tctaattaatgttgttatcattaatcaagttataatcaa 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2551315 tctaattaatgttgttatcattaatcaagttataatcaa 2551353  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 2556730 - 2556937
Alignment:
Q  14 gtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaaata 113  Q
    |||||||||||||||||||||||||||||| ||||  | |||||  || ||||||| ||||| || |||||||||||  | |||||||| ||||||||||    
T  2556730 gtgacatatcgaggatttaccggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata 2556829  T
Q  114 acattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgcctatctaa 213  Q
    |||||||| || ||||| ||||||| | |||||| | ||||||||||||||||||||||| ||||||||||||| |||||| |||| |||| ||||||||    
T  2556830 acattgtagctactcaagcaggaaaaatgacttcatttttttgtagaaatgctcatggaacagttagaaatacttttccaaatgtctcttgtctatctaa 2556929  T
Q  214 ttaatgtt 221  Q
    ||||||||    
T  2556930 ttaatgtt 2556937  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2566555 - 2566760
Alignment:
Q  13 tgtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaaat 112  Q
    ||||||||||||||||||||  ||||||||| ||||  | |||||  || ||||||| ||||| ||  |||||||||| || |||||||| |||||||||    
T  2566555 tgtgacatatcgaggatttattggaacttctgctagcaagatagctgttaatttaaattgtagctcccctggttgtttcaatattctattggatcaaaat 2566654  T
Q  113 aacattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgcctatcta 212  Q
    ||||||||| || ||||| ||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||    
T  2566655 aacattgtagctactcaagcaggaaaaaagacttcatttttttgtagaaatgctcatggaacagttagaaatacttttccaaatgtctcttgcctatcta 2566754  T
Q  213 attaat 218  Q
     |||||    
T  2566755 gttaat 2566760  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 2543658 - 2543838
Alignment:
Q  25 aggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaaataacattgtatct 124  Q
    ||||||||||||||||||| |||| |   |||| ||| | ||||| ||||| || |||||||||| | | ||| |||| || ||||| |||||||| |||    
T  2543658 aggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctcttctggttgttatgacattttattggaacaaaacaacattgtttct 2543757  T
Q  125 gctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgc 205  Q
    |||||||||||||||||| |||| |||||||||| |||||| |||||||  | |||||||||| |||||| ||||||||||    
T  2543758 gctcaaccaggaaagaaggcttcttctttttgtacaaatgcccatggaactgctagaaatactgttccaaatgtcccttgc 2543838  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 2534211 - 2534407
Alignment:
Q  22 tcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaaataacattgta 121  Q
    |||||||||||||||||||||| |||| |   |||| ||| | ||||| ||||| || |||||||||| | | ||| |||| || ||||| ||||||||     
T  2534211 tcgaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctcttctggttgttatgacattttattggaacaaaacaacattgtt 2534310  T
Q  122 tctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgcctatctaattaat 218  Q
    ||||||||||||| ||||  | |||| |||||||||| |||||| |||||||  | |||||||||| |||||| | |||||||| |||| |||||||    
T  2534311 tctgctcaaccagaaaaggcggcttcttctttttgtacaaatgcccatggaactgctagaaatactgttccaaatatcccttgcttatcaaattaat 2534407  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 1831833 - 1832027
Alignment:
Q  11 gatgtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaa 110  Q
    ||||||||||||||||||||||| ||||||||  |||  ||  |||| ||| | ||||| ||| | |||||||||||    || |||| ||| |||||||    
T  1831833 gatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattggatcaaa 1831932  T
Q  111 ataacattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgc 205  Q
    | || ||||| ||||||||||||||||  || ||||  |||   |||| ||||||||||||||  | || |||||||||||||| |||| |||||    
T  1831933 acaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc 1832027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 1866276 - 1866470
Alignment:
Q  11 gatgtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctattagatcaaa 110  Q
    ||||||||||||||||||||||| ||||||||  |||  ||  |||| ||| | ||||| ||| | |||||||||||    || |||| ||| |||||||    
T  1866276 gatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattggatcaaa 1866375  T
Q  111 ataacattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgc 205  Q
    | || ||||| ||||||||||||||||  || ||||  |||   |||| ||||||||||||||  | || |||||||||||||| |||| |||||    
T  1866376 acaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc 1866470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 2546828 - 2546889
Alignment:
Q  82 tggttgttttaagattctattagatcaaaataacattgtatctgctcaaccaggaaagaaga 143  Q
    ||||||||| || |||||||| ||||||||| ||||||| ||| ||||| ||||||||||||    
T  2546828 tggttgtttgaacattctattggatcaaaatgacattgtctcttctcaatcaggaaagaaga 2546889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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