View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11732_high_3 (Length: 627)
Name: NF11732_high_3
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Complemental strand, 2551003 - 2550404
Alignment:
| Q |
20 |
gtacatgcaggaataattgatccatatagtgcatgcagctgtgtcgtcatcttatctgtccattccatcacaaaagagtgtgaatgtcttactgtgcttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2551003 |
gtacatgcaggaataattgatccatatagtgcatgcagctgtgtcgtcatcttatctgtccattccatcacaaaagagtgtgaatgtcttactgtgcttg |
2550904 |
T |
|
| Q |
120 |
tttgatattctgtagatgtttcagagtggtggtgaggaaatggannnnnnnn-caacaaggtatccattttaaagttatttcaggtatgataccaatgtc |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2550903 |
tttgatattctgtagatgtttcggagtggtggtgaggaaatggatttttttttcaacaaggtatccattttaaagttatttcaggtatgataccaatgtc |
2550804 |
T |
|
| Q |
219 |
ttaatctttataatggcgaaacttgtactcagtttgaattatcatcaacgtcaattgacactgttgctat---gttatgtttgtatgtctgcaaaatgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
2550803 |
ttaatctttataatggcgaaacttgtactcagtttgaattatcttcaacgtcaattgacactgttgctatattgttatgtttgtgtgtctgcaaaatgtt |
2550704 |
T |
|
| Q |
316 |
atgttatgccaaagattatttggatttaaaagtgttatgtttacctttcatggtgtcatcaacttgtttgatttttattgcgtggacttttcattttaaa |
415 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2550703 |
atgttatgccaa-gattatttggatt-aaaagtgttatgtttacctttcatggtgtcatcaacttgtttgatttttattgcgtagacttttcattttaaa |
2550606 |
T |
|
| Q |
416 |
cttctttaggaattgtataggataccttgtatgtaaagtattgaaatgttg-aaggtttaatctatatgtgtttgtgagtttgttctccttcttgcttgt |
514 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2550605 |
cttcattaggaattgtataggataccttgtatgtaaagtattgaaatgttggaaggtttaatctatatgtgttcgtgagtttgttctccttcttgcttgt |
2550506 |
T |
|
| Q |
515 |
ttacattggttctatttgatatctaattatggattcataattgtatccttacctatgctttttgttgtttaaggggttttgaaattttctatagtcccct |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2550505 |
ttacattggttctatttgatatctaattatggattcataattgtatccttacctatgctttttgttgtttaaggggttttgaaattttctatagtcccct |
2550406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 45 - 482
Target Start/End: Complemental strand, 9266073 - 9265628
Alignment:
| Q |
45 |
atagtgcatgcagctgtgtcgtcatcttatctgtccattccatcacaaaagagtgtgaatgtcttactgtgcttgtt---tgatattctgtagatgtttc |
141 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
9266073 |
atagtgcgtgcagctgcgtcgtcatcttatctgaccattttgtcacaaaagagtgtgaatgtcttattgtgcttgttgtttgatattatgtagatgtttt |
9265974 |
T |
|
| Q |
142 |
agagtggtggtgaggaaatggannnnnnnn---caacaaggtatccattttaaagttatttcaggtat--gataccaatgtcttaatctttataatggcg |
236 |
Q |
| |
|
||| ||||||||||||| | ||| | ||||||||| | ||||||||| ||||||| ||||| |||||||||||||| ||||||| | |
|
|
| T |
9265973 |
tgaggtgtggtgaggaaataaatttttttatttcaatagggtatccatctgaaagttattccaggtatatgatacaaatgtcttaatcttcataatggtg |
9265874 |
T |
|
| Q |
237 |
aaacttgtactcagtttgaattatcatcaacgtcaattgacactgttgctatgttatgtttgtatgtctgcaaaatgttatgttatgccaaagattattt |
336 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
9265873 |
aaacttttactcaatttgaattatcatcaatgtcaattgacactgttgctatgttatgtttgtgtgtctgcaaaatgctatgttatgtcaa-gattattt |
9265775 |
T |
|
| Q |
337 |
ggatttaaaagtgttatgtttacctttcatggtgtcatcaacttgtttgatttttattgcgtggacttttcattttaaactt-ctttaggaattgtatag |
435 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
9265774 |
ggatttaaaagtgttatgtttacccttcatggtgtcatca-cttgtttgttttttattgtgtgggcttttcattttaaactttctttaggaattctatag |
9265676 |
T |
|
| Q |
436 |
gata--ccttgtatgtaaagtattgaaatgttgaaggtttaatctatat |
482 |
Q |
| |
|
|||| || ||||| || |||||||||||||||| |||||| |||||| |
|
|
| T |
9265675 |
gatataccatgtatacaa-gtattgaaatgttgaaagtttaaactatat |
9265628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 227 - 616
Target Start/End: Original strand, 7710398 - 7710787
Alignment:
| Q |
227 |
tataatggcgaaacttgtactcagtttgaattatcatcaacgtcaattgacactgttgctatg---ttatgtttgtatgtctgcaaaatgttatgttatg |
323 |
Q |
| |
|
|||||||| | || |||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
7710398 |
tataatggtgtaaattgtacccagtttgaattatcatcaatgtcaattgacactgtttctatgctgttatgtttgtgtgtctgcaaaatgttatgttatg |
7710497 |
T |
|
| Q |
324 |
ccaaagattatttggatttaaaagtgttatgtttacctttcatggtgtcatcaacttgtttgatttttattgcgtggacttttcattttaaacttcttta |
423 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7710498 |
ccaa-gattatttggagttaaaagtgttatgattacctttcatggtgtcatcaacttgtcagatttttattgcgtggccttttcattttaaactttttta |
7710596 |
T |
|
| Q |
424 |
ggaattgtataggataccttgtatgtaaagtattgaaatgttgaaggtttaatctatatgtgtttgtgagtttgttctccttcttgcttgtttacattgg |
523 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |||| ||| |
|
|
| T |
7710597 |
ggaattgtataggataccttgtatg-caagtattgaaatgttgaaggtttaatctata--tgttcgtgagtttgttctcctttgtccttgattacgttga |
7710693 |
T |
|
| Q |
524 |
ttctatttgatatctaattatggattcataattgtatccttacctatgc-tttttgttgtttaaggggttttgaaattttctatagtccccttt |
616 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
7710694 |
ttctatctgatatctaattatggattcataattgtatacttacctatgcttttttgttgttttaggggttttgaaattttctatagttcccttt |
7710787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 63 - 482
Target Start/End: Original strand, 22918084 - 22918506
Alignment:
| Q |
63 |
tcgtcatcttatctgtccattccatcacaaaagagtgtgaatgtcttactgtgcttgttt---gatattctgtagatgtttcagagtggtggtgaggaaa |
159 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
22918084 |
tcgtcatcttatctgcccattccgtcacaaaagagtgtgaatatcttattgtgcttgttttttgatattttgtagatgtttcggaggggtggtgaggaaa |
22918183 |
T |
|
| Q |
160 |
tggannnnnnnncaacaaggtatccattttaaagttatttcaggtatgataccaatgtcttaatctttataatggcgaaacttgtactcagtttgaatta |
259 |
Q |
| |
|
| || ||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22918184 |
tagattttttt-caacaaggtatccatctgaaagttattccaggtatgatatcaatgtcttaatctttataatggtgaaacttgtactcagtttgaatta |
22918282 |
T |
|
| Q |
260 |
tcatcaacgtcaattgacactgttgcta---tgttatgtttgtatgtctgcaaaatgttatgttatgccaaagattatttggatttaaaagtgttatgtt |
356 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22918283 |
tcatcaatgtcaattgacattgttgctatgttgttatgtttgtgtctctgcaaaatgctatgttatgcc-aagattatttggatttaaaagtgttatgtc |
22918381 |
T |
|
| Q |
357 |
tacctttcatggtgtcatcaacttgtttgatttttattgcgtggacttttcattttaaacttctttaggaattgtataggataccttgtatgtaaagtat |
456 |
Q |
| |
|
|||| |||||| | ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
22918382 |
tacccttcatgttatcatcaacttgtttgttttttattgcctaggattttcattttaaacttctttaggaattctataggataccatgtatg-caagtat |
22918480 |
T |
|
| Q |
457 |
tgaaatgttgaaggtttaatctatat |
482 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
22918481 |
tgaaatgttgaaggtttaagctatat |
22918506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University