View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_31 (Length: 240)
Name: NF11732_high_31
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_31 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 37555036 - 37555270
Alignment:
| Q |
6 |
atagaacagatgtaaaagaaaggaaagacataagactgccacgtaaatggttggagttggtataggtgtcgagagtagtcatgtgttagatgttgatttt |
105 |
Q |
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| T |
37555036 |
atagaacagatgtaaaagaaaggaaagacataagactgccacgtaaatggttggagttggtataggtgtcgagagtagtcatgtgttagatgttgatttt |
37555135 |
T |
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| Q |
106 |
ctattgtatgtgagagatatacataattctttccattccaacaagtcacccaaacaactcagaaaaagcatagtgtgttttggtagtttcctagctcaaa |
205 |
Q |
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| T |
37555136 |
ctattgtatgtgagagatatacataattctttccattccaacaagtcacccaaacaactcagaaatagcatagtgtgttttggtagtttcctagctcaaa |
37555235 |
T |
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| Q |
206 |
caatggaaggcaacaagactatggttccatcatca |
240 |
Q |
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| T |
37555236 |
caatggaaggcaacaagactatggttccatcatca |
37555270 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 4445046 - 4445007
Alignment:
| Q |
201 |
tcaaacaatggaaggcaacaagactatggttccatcatca |
240 |
Q |
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| T |
4445046 |
tcaaacaatggaaggaaacaagactatggtttcatcatca |
4445007 |
T |
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