View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_35 (Length: 228)
Name: NF11732_high_35
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 2558587 - 2558803
Alignment:
| Q |
7 |
ctttagttcttcatcatcac-ttcatcaaataggtggttatggtagatacaaaatccattggtggacccatccacctccatactagaaggagagtcaatg |
105 |
Q |
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| T |
2558587 |
ctttagttcttcatcatcacattcatcaaataggtggttatggtagatacaaaacccattggtggacccatccatctccatactagaaggagagtcaatg |
2558686 |
T |
|
| Q |
106 |
ccttgcaagtctaaaaatagtttgcggagttaaaccagatcctatatcttgcaagacctagggcnnnnnnnaacttcatttaagggannnnnnnaaagca |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
2558687 |
ccttgcaagtctaaaaatcgtttgcggagttaaaccagatcctatatcttgcaagacctagggctttttttaacttcatttaagggatttttttaaagca |
2558786 |
T |
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| Q |
206 |
tgtgtagatgctaatgc |
222 |
Q |
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||||||||||||||||| |
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| T |
2558787 |
tgtgtagatgctaatgc |
2558803 |
T |
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