View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_high_4 (Length: 608)
Name: NF11732_high_4
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 595
Target Start/End: Original strand, 34958079 - 34958659
Alignment:
| Q |
11 |
gcagagaattgtggtcctgttggttggtgcgatctcaaccacagttgctttgtggttaatgatatgaaatagctttaatatgtatttggtaatctaaaat |
110 |
Q |
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| T |
34958079 |
gcagagaattgtggtcctattggttggtgcgatctcaaccacagttgctttgtggttaatgatatgaaatagctttaatatgt----ggtaatctaaaat |
34958174 |
T |
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| Q |
111 |
gcgtttaggaccnnnnnnnaaaaaccgtatgtaaatgtatatacagcaccacgtacataacaaatagattagatacacatgtttggttttaaggtgtagt |
210 |
Q |
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| T |
34958175 |
gcgtttaggacctttttttaaaaaccgtatgtaaatgtatatacagcaccacgtacataacaaatagattagatacacatgtttggttttaaggtgtagt |
34958274 |
T |
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| Q |
211 |
tttttaaagattgaaaaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaa |
310 |
Q |
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| T |
34958275 |
tttttaaagattgaaaaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaa |
34958374 |
T |
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| Q |
311 |
atatgttaatgctcggtgagactcctcggagcttaaacaaaatcacagtaatttcattaaactcacccaatctcaacatataataatatttatcaagtat |
410 |
Q |
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| T |
34958375 |
atatgttaatgctcggtgagactcctcggagcttaaacaaaatcacagtaatttcattaaactcacccaatctcaacatatactaatatttatcaagtat |
34958474 |
T |
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| Q |
411 |
tattatatgatcttgggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatattctcactcttactagttcaggatatgtcagtag |
510 |
Q |
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| T |
34958475 |
tgttatatgatctttggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatattctcactcttactagttcaggatatgtcagtag |
34958574 |
T |
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| Q |
511 |
ggtcgaaaaaagtcataattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaattaagtacaagaacaaagtg |
595 |
Q |
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| T |
34958575 |
ggtcgaaaaaagtcataattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaattaagtacaataacaaagtg |
34958659 |
T |
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