View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_low_10 (Length: 550)

Name: NF11732_low_10
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_low_10
NF11732_low_10
[»] chr2 (5 HSPs)
chr2 (25-540)||(28782815-28783327)
chr2 (313-540)||(28741995-28742222)
chr2 (304-408)||(28699494-28699598)
chr2 (429-480)||(28699422-28699473)
chr2 (304-402)||(28735000-28735098)
[»] chr8 (6 HSPs)
chr8 (313-480)||(10769397-10769564)
chr8 (429-507)||(2034784-2034862)
chr8 (447-509)||(2055874-2055936)
chr8 (429-480)||(2048105-2048156)
chr8 (447-480)||(2059078-2059111)
chr8 (448-480)||(2052018-2052050)
[»] chr4 (2 HSPs)
chr4 (429-480)||(48904896-48904947)
chr4 (124-160)||(3284202-3284238)
[»] chr6 (1 HSPs)
chr6 (124-184)||(10384036-10384097)


Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 25 - 540
Target Start/End: Complemental strand, 28783327 - 28782815
Alignment:
Q  25 ctattctacttatgtagtatattttattggagaataaatctgcgactataaagcatctatagttccgtttgtgccattcnnnnnnnnnnnnnnnnnnnct 124  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                   ||    
T  28783327 ctattctacttctgtagtatattttattggagattaaatctgcgactataaagcatctatagttccgtttgtgccattcaaaaaataaaaaaaaa---ct 28783231  T
Q  125 atagttccgtttgtattactgtgataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaattat 224  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783230 atagttccgtttgtattactgtaataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaattat 28783131  T
Q  225 tccccctacatgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatgaca 324  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783130 tccccctacacgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatgaca 28783031  T
Q  325 aattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaacca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783030 aattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaacca 28782931  T
Q  425 atacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggatt 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782930 atacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggatt 28782831  T
Q  525 gatgggatctctgctc 540  Q
    ||||||||||||||||    
T  28782830 gatgggatctctgctc 28782815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 313 - 540
Target Start/End: Complemental strand, 28742222 - 28741995
Alignment:
Q  313 taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc 412  Q
    |||||||||||| |||||||||||| ||||||| |||  | ||||| |  || ||||| |||||||||||||||| ||||||||  |||| || ||   |    
T  28742222 taacaaatgacagattcaagagtgttgagcacagagtactagcaaatactattggtccaagagtatctgttgcatcttttttcagggcaggtcctagagc 28742123  T
Q  413 tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaat 512  Q
          ||| |  || ||||||||||||||| |||||||||||||||| ||||| | ||| | |||||  ||| || |||| | ||||||||||||||||    
T  28742122 acaagaaaagctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccacttttacagattttgtagcctactacaat 28742023  T
Q  513 acaaaagggattgatgggatctctgctc 540  Q
     |||||||| ||||||| ||||| ||||    
T  28742022 gcaaaagggcttgatggcatctcagctc 28741995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 28699598 - 28699494
Alignment:
Q  304 tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcaga 403  Q
    |||||||| ||||||||||||||||||||||||| || || | |||  |||||||   ||| ||||| ||| ||||||||||||| |||||||| ||||     
T  28699598 tacagctgataacaaatgacaaattcaagagtgttgaacatagagtactggcaaatggcattggtccaagaatatctgttgcatgctttttcaaggcagg 28699499  T
Q  404 tctta 408  Q
    |||||    
T  28699498 tctta 28699494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 28699473 - 28699422
Alignment:
Q  429 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 480  Q
    |||||||||| |||||| ||||||||| |||| ||||||| |||||||||||    
T  28699473 ggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaa 28699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 28735098 - 28735000
Alignment:
Q  304 tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcag 402  Q
    |||||||  |||||||||| |||||||||||||| || || | |||  |||||||   ||| ||||| ||| ||||||||||||| |||||||| ||||    
T  28735098 tacagcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaatgacattggtccaagaatatctgttgcatgctttttcaaggcag 28735000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 480
Target Start/End: Original strand, 10769397 - 10769564
Alignment:
Q  313 taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc 412  Q
    ||||||||||||||||||||||||||||||||| |||  | ||||| |   | ||||| ||| ||||||||||||||||||||    | | || ||  ||    
T  10769397 taacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaagaatatctgttgcatgttttttctgcaccggtcataggtc 10769496  T
Q  413 tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 480  Q
     | |||||| |  || ||||||||||| ||| | |||||||||||||||||||||| ||||| |||||    
T  10769497 atcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaa 10769564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 507
Target Start/End: Original strand, 2034784 - 2034862
Alignment:
Q  429 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctact 507  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||| ||||| |||  |||| || |||||||| ||||    
T  2034784 ggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttact 2034862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 2055874 - 2055936
Alignment:
Q  447 ttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactac 509  Q
    |||||||||||||||||||| |||||||||||||  ||| || | || |||||||||||||||    
T  2055874 ttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactac 2055936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 2048105 - 2048156
Alignment:
Q  429 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 480  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  2048105 ggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaa 2048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 2059078 - 2059111
Alignment:
Q  447 ttatcagaagacaatcctcccaaatacaaagaaa 480  Q
    |||||||||||||||||||||||||||| |||||    
T  2059078 ttatcagaagacaatcctcccaaatacagagaaa 2059111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 2052018 - 2052050
Alignment:
Q  448 tatcagaagacaatcctcccaaatacaaagaaa 480  Q
    ||||||||||||||||||||||||||| |||||    
T  2052018 tatcagaagacaatcctcccaaatacagagaaa 2052050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 48904947 - 48904896
Alignment:
Q  429 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 480  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  48904947 ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa 48904896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 3284202 - 3284238
Alignment:
Q  124 tatagttccgtttgtattactgtgataaattagggtt 160  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  3284202 tatagttccgtttttattactgtgatgaattagggtt 3284238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 10384036 - 10384097
Alignment:
Q  124 tatagttccgtttgtattactgtgataaattaggg-ttcagtgttgcaagtaatatatatag 184  Q
    ||||||| | ||||||||||||||||||||||||| || ||| ||  |||||||||||||||    
T  10384036 tatagtttcatttgtattactgtgataaattagggttttagtattataagtaatatatatag 10384097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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