View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_12 (Length: 516)
Name: NF11732_low_12
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 24043731 - 24043323
Alignment:
| Q |
20 |
atttcaacatagaattttataaacataagccctataaaccgctgttataatattcaacttcgttcacatgattcttattagacaacccgctgaggtcata |
119 |
Q |
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| T |
24043731 |
atttcaacatagaattttataaacataagccctataaaccgctgttataatattcaacttcgttcacatgattcttattagacaacccgctgaggtcata |
24043632 |
T |
|
| Q |
120 |
aaatgcataactatgcacctgcagagcagtcatgcttaacaaaatatgaaaatagctttcattcaaaatattaattttggaaacatgagtaaaaataatt |
219 |
Q |
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| T |
24043631 |
aaatgcataactatggacctgcagagcagtcatgcttaacaaaatatgaaaatagctttcattcaaaatattaattttggaaacatgagtaaaaataatt |
24043532 |
T |
|
| Q |
220 |
acaggggatcaagatagtgaagaaaaaatgcgccagcctccttaagaccttaaccgtannnnnnncttttcaaaacatcaaaaacttgcttgatatgaca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24043531 |
acaggggatcaagatagtgaagaaaaaatgcgccagcctacttaagaccttaaccgtatttttttcttttcaaaacatcaaaaacttgcttgatatgaca |
24043432 |
T |
|
| Q |
320 |
aatattaaagcatcaagattattttgtcttgtaagaacaaactttcctttaccatgtcatagtacacaagaatgttgactgagacaacttattccaaatt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043431 |
aatattaaagcatcaagattattttgtcttgtaagaacaaactttcctttaccatgtcatagtacacaagaatgttgactgagacaacttattccaaatt |
24043332 |
T |
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| Q |
420 |
ccaaatcaa |
428 |
Q |
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| T |
24043331 |
ccaaatcaa |
24043323 |
T |
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