View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_14 (Length: 424)
Name: NF11732_low_14
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 10088414 - 10088766
Alignment:
| Q |
19 |
agtgagccctcgtggtttcctttcaataaggggttttggaactgatgcttattcatcatgaagttgttgtgcaactttgatgtattttagatgacaattt |
118 |
Q |
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| T |
10088414 |
agtgagccctcgtggtttcctttcaataaggggttttggaactgatgcttgatcatcatgaagttgttgtgcaactttgatgtattttagatgacaattt |
10088513 |
T |
|
| Q |
119 |
acaaatgagaatattgtgttccatcagtgtcgttaactgtgggtagcggaaaatagcagtttgttcaaattacactgcgcagcagtcttatagtgccatt |
218 |
Q |
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| T |
10088514 |
acaaatgagaatattgtgttccatcagtgtcgttaactgtgggtagcggaaaatagcggtttgttcaaattacactgcgcagcagtcttatagtgccatt |
10088613 |
T |
|
| Q |
219 |
atagccgctactatttgacaatattttctacataaattaaatactgtattgcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagc |
318 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
10088614 |
atagccgatgctatttgacaatattttctacataaattaaatactgtattgcggaacaatagcgatttgtttaaattctgctacgccatagcgttatagc |
10088713 |
T |
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| Q |
319 |
actgtgatccatgtattcttgtttggtacattttggactatggaaaagtgcaa |
371 |
Q |
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| T |
10088714 |
actgtgatccatttattcttgtttggtacattttggactatggaaaagtgcaa |
10088766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 55469965 - 55470013
Alignment:
| Q |
270 |
cggaacaatagcgatttgtttaaattctgctacaccatagcgctatagc |
318 |
Q |
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| T |
55469965 |
cggaacaatagcggtttgtttaaattccgctacactatagcggtatagc |
55470013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 27743176 - 27743125
Alignment:
| Q |
269 |
gcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagcac |
320 |
Q |
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||||||||||||| ||||||| |||||||| |||| ||||||||||||||| |
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| T |
27743176 |
gcggaacaatagcaatttgttaaaattctgacacacgatagcgctatagcac |
27743125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 7108314 - 7108269
Alignment:
| Q |
144 |
agtgtcgttaactgtgggtagcggaaaatagcagtttgttcaaatt |
189 |
Q |
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| T |
7108314 |
agtgttgttaatcgtggatagcggaaaatagcagtttgttcaaatt |
7108269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 42581908 - 42581863
Alignment:
| Q |
272 |
gaacaatagcgatttgtttaaattctgctacaccatagcgctatag |
317 |
Q |
| |
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| T |
42581908 |
gaacaagagcgatttgttggaattctgctacatcatagcgctatag |
42581863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 21891050 - 21891005
Alignment:
| Q |
257 |
aaatactgtattgcggaacaatagcgatttgtttaaattctgctac |
302 |
Q |
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| T |
21891050 |
aaatattgtattgtggaacaatagcaatttgttgaaattctgctac |
21891005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 32427143 - 32427188
Alignment:
| Q |
265 |
tattgcggaacaatagcgatttgtttaaattctgctacaccatagc |
310 |
Q |
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||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
32427143 |
tattgcggaacaataatggtttgttcaaattctgctacaccatagc |
32427188 |
T |
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