View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_15 (Length: 385)
Name: NF11732_low_15
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 44488347 - 44487977
Alignment:
| Q |
1 |
ctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttctaatagagttacatggccagggtaccatgtgattaatgctacagat |
100 |
Q |
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| T |
44488347 |
ctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttctaatagagttacatggccagggtaccatgtgattaatgctacagat |
44488248 |
T |
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| Q |
101 |
gcttcaaattttacggttgataattttctgcaggggaatgtttggttgcctcaaatgggagttccttatattcgtgaacttacaacttttaattagagaa |
200 |
Q |
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| T |
44488247 |
gcttcaaattttacggttgacaattttctgcaggggaatgtttggttgcctcaaatgggagttccttatattcgtgaacttacaacttttaattagagaa |
44488148 |
T |
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| Q |
201 |
cacaagaggaacgatgaataaaggactacata-----------ttgatgctgattgaagaccaaaattatttgatatatttattctttgctgttgttttt |
289 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44488147 |
cacaagaggaacgatgaataaaggactacatattgaggattaattgatgctgattgaagaccaaaattatttgatatatttattctttgctgttgttttt |
44488048 |
T |
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| Q |
290 |
aatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgttctgcttcctttgct |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44488047 |
aatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgttctgcttcctttgct |
44487977 |
T |
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