View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_low_20 (Length: 349)

Name: NF11732_low_20
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_low_20
NF11732_low_20
[»] chr8 (5 HSPs)
chr8 (1-340)||(26192749-26193088)
chr8 (1-30)||(7194270-7194299)
chr8 (1-29)||(4615709-4615737)
chr8 (1-29)||(29729127-29729155)
chr8 (1-29)||(38337060-38337088)
[»] chr3 (7 HSPs)
chr3 (147-306)||(45997039-45997204)
chr3 (1-30)||(34102644-34102673)
chr3 (1-30)||(34898800-34898829)
chr3 (1-30)||(45198731-45198760)
chr3 (1-30)||(52670186-52670215)
chr3 (1-37)||(11250624-11250660)
chr3 (1-29)||(52434700-52434728)
[»] chr1 (4 HSPs)
chr1 (1-32)||(13538479-13538510)
chr1 (1-32)||(45271772-45271803)
chr1 (1-32)||(50824443-50824474)
chr1 (1-30)||(42299546-42299575)
[»] chr7 (3 HSPs)
chr7 (2-43)||(3532573-3532614)
chr7 (1-30)||(39098144-39098173)
chr7 (1-29)||(7691881-7691909)
[»] chr6 (2 HSPs)
chr6 (1-30)||(19892309-19892338)
chr6 (1-30)||(34432830-34432859)
[»] chr5 (6 HSPs)
chr5 (1-30)||(12767972-12768001)
chr5 (1-30)||(36888428-36888457)
chr5 (1-29)||(8478926-8478954)
chr5 (1-37)||(28308235-28308271)
chr5 (1-29)||(29045896-29045924)
chr5 (1-29)||(39165026-39165054)
[»] chr4 (2 HSPs)
chr4 (1-30)||(4958589-4958618)
chr4 (1-30)||(8848245-8848274)
[»] chr2 (2 HSPs)
chr2 (1-30)||(19612723-19612752)
chr2 (1-30)||(31223628-31223657)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-37)||(11995-12031)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-29)||(236388-236416)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 26192749 - 26193088
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtttacgacgatgatttcacatataatctctactaacacaaattaatgctaattgagtattttaagttatg 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192749 atatgcaatatccctaccaactgaactaagctcacgacgatgatttcacatataatctctactaacacaaattaatgctaattgagtattttaagttatg 26192848  T
Q  101 caatcaaaattgtagttccatcaattgattaccctacaaaactccttctctctaaaacatcctccaaattctctctagcaacccattgccttcaagcttc 200  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192849 caatcaagattgtagttctatcaattgattaccctacaaaactccttctctctaaaacatcctccaaattctctctagcaacccattgccttcaagcttc 26192948  T
Q  201 caacattttatcttcccttctaatctgaatcggaatgccaccgtgtagatataggtacgtggtggtgcgacggtcggaatagccacccgcacaatcctta 300  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  26192949 caacattttctcttcccttctaatctgaatcggaatgacaccatgtagatataggttcgtggtggtgcgacggtcggaatagccacccgcaccatcctta 26193048  T
Q  301 ccagttattctggttggccatgttggaggtctttggtggt 340  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26193049 ccagttattctggttggccacgttggaggtctttggtggt 26193088  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 7194299 - 7194270
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  7194299 atatgcaatatccctaccaactgaactaag 7194270  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4615709 - 4615737
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  4615709 atatgcaatatccctaccaactgaactaa 4615737  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29729155 - 29729127
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  29729155 atatgcaatatccctaccaactgaactaa 29729127  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38337060 - 38337088
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  38337060 atatgcaatatccctaccaactgaactaa 38337088  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 45997204 - 45997039
Alignment:
Q  147 tctctctaaaacatcctccaaattctctctagcaacccattgccttcaagcttccaacattttatcttcccttctaatctga-----atcggaatg-cca 240  Q
    ||||||||||||||||||    ||||||||||||| |||  |||||| |||||||||  | || ||||||||||   |||||     ||| ||||  |||    
T  45997204 tctctctaaaacatcctctgccttctctctagcaatccaccgccttccagcttccaatctcttctcttcccttcccgtctgatccaaatcagaatttcca 45997105  T
Q  241 ccgtgtagatataggtacgtggtggtgcgacggtcggaatagccacccgcacaatccttaccagtt 306  Q
    || ||||||||||||| |||||||||||||| ||| | |||||||||||||| | |||| ||||||    
T  45997104 ccatgtagatataggttcgtggtggtgcgacagtcaggatagccacccgcaccacccttgccagtt 45997039  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34102644 - 34102673
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  34102644 atatgcaatatccctaccaactgaactaag 34102673  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34898800 - 34898829
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  34898800 atatgcaatatccctaccaactgaactaag 34898829  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45198760 - 45198731
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  45198760 atatgcaatatccctaccaactgaactaag 45198731  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 52670186 - 52670215
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  52670186 atatgcaatatccctaccaactgaactaag 52670215  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11250624 - 11250660
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtttacga 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  11250624 atatgcaatatccctaccaactgagctaagttcacga 11250660  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52434700 - 52434728
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  52434700 atatgcaatatccctaccaactgaactaa 52434728  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 13538479 - 13538510
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  13538479 atatgcaatatccctaccaactgaactaagtt 13538510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 45271803 - 45271772
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  45271803 atatgcaatatccctaccaactgaactaagtt 45271772  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50824443 - 50824474
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  50824443 atatgcaatatccctaccaactgaactaagtt 50824474  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42299546 - 42299575
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  42299546 atatgcaatatccctaccaactgaactaag 42299575  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 3532614 - 3532573
Alignment:
Q  2 tatgcaatatccctaccaactgaactaagtttacgacgatga 43  Q
    ||||||||||||||||||||||||||||| | |||| |||||    
T  3532614 tatgcaatatccctaccaactgaactaagatcacgaggatga 3532573  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39098173 - 39098144
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  39098173 atatgcaatatccctaccaactgaactaag 39098144  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7691909 - 7691881
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  7691909 atatgcaatatccctaccaactgaactaa 7691881  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 19892309 - 19892338
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  19892309 atatgcaatatccctaccaactgaactaag 19892338  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34432830 - 34432859
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  34432830 atatgcaatatccctaccaactgaactaag 34432859  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 12768001 - 12767972
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  12768001 atatgcaatatccctaccaactgaactaag 12767972  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36888428 - 36888457
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  36888428 atatgcaatatccctaccaactgaactaag 36888457  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8478926 - 8478954
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  8478926 atatgcaatatccctaccaactgaactaa 8478954  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28308271 - 28308235
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtttacga 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28308271 atatgcaatatccctaccaactgagctaaatttacga 28308235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29045924 - 29045896
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  29045924 atatgcaatatccctaccaactgaactaa 29045896  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39165054 - 39165026
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  39165054 atatgcaatatccctaccaactgaactaa 39165026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4958589 - 4958618
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  4958589 atatgcaatatccctaccaactgaactaag 4958618  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 8848245 - 8848274
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  8848245 atatgcaatatccctaccaactgaactaag 8848274  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 19612752 - 19612723
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  19612752 atatgcaatatccctaccaactgaactaag 19612723  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31223657 - 31223628
Alignment:
Q  1 atatgcaatatccctaccaactgaactaag 30  Q
    ||||||||||||||||||||||||||||||    
T  31223657 atatgcaatatccctaccaactgaactaag 31223628  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12031 - 11995
Alignment:
Q  1 atatgcaatatccctaccaactgaactaagtttacga 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  12031 atatgcaatatccctaccaactgagctaagttcacga 11995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 236388 - 236416
Alignment:
Q  1 atatgcaatatccctaccaactgaactaa 29  Q
    |||||||||||||||||||||||||||||    
T  236388 atatgcaatatccctaccaactgaactaa 236416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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