View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11732_low_22 (Length: 337)
Name: NF11732_low_22
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 7414499 - 7414795
Alignment:
| Q |
11 |
cacagaccaaactaaactaaaccaatcacacatacacaaattaatcatccaaagtcaaagcgnnnnnnnttatctcccactcttctataccatgattata |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7414499 |
cacacaccaaactaaactaaaccaatcacacatacacaaattaatcatccaaagtcaaagcgaaaaaaattatctcccactcttctataccatgattata |
7414598 |
T |
|
| Q |
111 |
tacccccaaccctttccaaatgtagtcaacaaaaaacaaaccaacatcataatcatataatgagtaattaaatcccccagcttcaccttaactaatcaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414599 |
tacccccaaccctttccaaatgtagtcaacaaaaaacaaaccaacatcataatcatataatgagtaattaaatcccccagcttcaccttaactaatca-- |
7414696 |
T |
|
| Q |
211 |
tgcagtacattagaagaggatctgaggtccccctcagcccgaatattcaaccttgaaacataaaactgacatgttggggagtaatgtatttgcagctgac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414697 |
--cagtacattagaagaggatctgaggtccctctcagcccgaatattcaaccttgaaacataaaactgacatgttggggagtaatgtatttgcagctgac |
7414794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 35203603 - 35203544
Alignment:
| Q |
222 |
agaagaggatctgaggtccccctcagcccgaatattcaaccttgaaacataaaactgaca |
281 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
35203603 |
agaagaggatccgaggttcctctcagcccaaattctcaaccttgaaacataaaactgaca |
35203544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University