View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_23 (Length: 320)
Name: NF11732_low_23
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 117 - 303
Target Start/End: Complemental strand, 5566067 - 5565881
Alignment:
| Q |
117 |
cagttatttaattgctccgacagggccaacttgcccatcgatcgttggccatttctttaacaggctaaccgaagataggtataaaatctcaacatattat |
216 |
Q |
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| T |
5566067 |
cagttatttaattgctccgacagggccaacttgcccgtcgactgttggccatttctttaacaggctaaccgaagataggtataaaatctcaacatattat |
5565968 |
T |
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| Q |
217 |
gtaagatttttctactgaaattctctcaggacatcaatttggtcgtcttctctaattttatcaaggcactaatgaatccctcaagat |
303 |
Q |
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| T |
5565967 |
gtaagatttttctactaaaattctctcaagacatcaatttggtcgtcttctctaattttatcaaggcactaattaatccctcaagat |
5565881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 5566176 - 5566108
Alignment:
| Q |
8 |
caacgaaatggaacaacgaagtgaaaaatgaactttatattcaaataccaaactaattaaattaccaat |
76 |
Q |
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| T |
5566176 |
caacgaaatggaacaacgaagtgaaaaatgaactttatattcaaataccaaactaattaaattaccaat |
5566108 |
T |
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